View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10475_low_6 (Length: 249)
Name: NF10475_low_6
Description: NF10475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10475_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9587325 - 9587086
Alignment:
| Q |
1 |
ttcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcct |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9587325 |
ttcccgcaattgggttgcatgctttctccttaaagattacaacgttgacatctctcatttgttcaaacatccgtgttttcaatagtaatgacttgttcct |
9587226 |
T |
|
| Q |
101 |
cattgccaaatgtttcccttttcttgaaatacttgacctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9587225 |
cattgccaaatgtttccctttacttgaaatacttgacctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctt |
9587126 |
T |
|
| Q |
201 |
tcgttagcacttttcagactccgcaaaattaatctctctg |
240 |
Q |
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| T |
9587125 |
tcgttagcacttttcagactccgcaaaattaatctctctg |
9587086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 9581735 - 9581516
Alignment:
| Q |
20 |
agctttctccttaaagattacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcctcattgccaaatgtttccct |
119 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
9581735 |
agctttctccgtaaagattacaacgttgacatctctcatttgttcgaacatccgtattttcaatagtaatgacttgttcctcattgccgaatgttttcct |
9581636 |
T |
|
| Q |
120 |
tttcttgaaatacttgacctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagcacttttcagac |
219 |
Q |
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| T |
9581635 |
ttacttgaaatacttgacctcaatggccctttattttgtatcgacggttgcaatagcattctccatggggtagagactctttcattagcattttccagac |
9581536 |
T |
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| Q |
220 |
tccgcaaaattaatctctct |
239 |
Q |
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| T |
9581535 |
tccgcaaaattaatctctct |
9581516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 10615777 - 10615657
Alignment:
| Q |
1 |
ttcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcct |
100 |
Q |
| |
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||||||||| |||||| | |||||||||| |||||||||||| ||||| ||||||| |||||| ||||| | |||||||||| ||| ||||||| |
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| T |
10615777 |
ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcccacatcgctaacttcaatagtagtgatctgttcct |
10615678 |
T |
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| Q |
101 |
cattgccaaatgtttcccttt |
121 |
Q |
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||||| ||||||||||||| |
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| T |
10615677 |
tattgcagaatgtttcccttt |
10615657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 532753 - 532653
Alignment:
| Q |
135 |
gacctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatc |
234 |
Q |
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||||||||| |||| ||| ||| |||| | ||| || ||||||||||||||| || ||||||||||| ||| ||||||||| ||||||||| |||||| |
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| T |
532753 |
gacctaagtaaccccttatcttgcgacggctgttacagtagctttctccatggtgtggagactctttcattatcacttttcaaactccgcaaggttaatc |
532654 |
T |
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| Q |
235 |
t |
235 |
Q |
| |
|
| |
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|
| T |
532653 |
t |
532653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 9412110 - 9412061
Alignment:
| Q |
79 |
tcaatagtaatgacttgttcctcattgccaaatgtttcccttttcttgaa |
128 |
Q |
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||||||| ||||||||||| |||||||| ||||||||||||| |||||| |
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| T |
9412110 |
tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa |
9412061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 6417156 - 6417020
Alignment:
| Q |
1 |
ttcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcct |
100 |
Q |
| |
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|||||| || |||||| | |||||||||| ||||| |||||| ||||| ||||||| |||||| ||||| | |||||| ||| ||| ||||||| |
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| T |
6417156 |
ttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcccacatcgttaatttcaacggtagtgatctgttcct |
6417057 |
T |
|
| Q |
101 |
cattgccaaatgtttcccttttcttgaaatacttgac |
137 |
Q |
| |
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||||| ||||||||||||| |||||| ||||||| |
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| T |
6417056 |
tattgcagaatgtttccctttgcttgaagaacttgac |
6417020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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