View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10475_low_7 (Length: 242)
Name: NF10475_low_7
Description: NF10475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10475_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13492350 - 13492592
Alignment:
| Q |
1 |
attatatcatgtgggtttgatttggttgacaaatgtaattttctattttcttttgctgaagtttgagattgtaagtc--atatgtgtacctcccttcaat |
98 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
13492350 |
attatatcatgtgggcttgatttggttgacaaatgtaattttctattttcttttgctgaagtttgagattgtaagtcatatatgtgtacctcctttcaat |
13492449 |
T |
|
| Q |
99 |
aaattataataatacttcatctattcatttttac-ttttnnnnnnnnnntgtatgtaactatttatttgttgtttttgttatgaataatattaataatat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13492450 |
aaattataataatacttcatctattcatttttacttttttttaaaaaaatgtatgtaactatttatttgttgtttttgttatgaataatattaataatat |
13492549 |
T |
|
| Q |
198 |
aacctggatttccattgtccataagctttctataactcctatg |
240 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13492550 |
aacgtggatttccattgtccataagctttctataactcctatg |
13492592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 13485911 - 13486047
Alignment:
| Q |
1 |
attatatcatgtgggtttgatttggttgacaaatgtaattttctattttct-tttgctgaagtttgagattgtaagtcatatgtgtacctcccttcaata |
99 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13485911 |
attatatcatgtgggcttgatttggttgccaaatgtaattttctattttccgtttgctgaagtttgagattgtaagtcatatgtgtacctcccttcaaga |
13486010 |
T |
|
| Q |
100 |
aattataataatacttcatctattcatttttactttt |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13486011 |
aattataataatacttcatctattcatttttactttt |
13486047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 13495042 - 13495097
Alignment:
| Q |
176 |
ttatgaataatattaataatataacctggatttccattgtccataagctttctata |
231 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
13495042 |
ttatgaataatattattaatataatatggatgtccattatccataagctttctata |
13495097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 17188337 - 17188390
Alignment:
| Q |
178 |
atgaataatattaataatataacctggatttccattgtccataagctttctata |
231 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | ||||||| |||| ||||||||| |
|
|
| T |
17188337 |
atgaataatattaataacataacgtggatgttcattgtctataacctttctata |
17188390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University