View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10475_low_9 (Length: 232)
Name: NF10475_low_9
Description: NF10475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10475_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 65 - 216
Target Start/End: Complemental strand, 14253246 - 14253095
Alignment:
| Q |
65 |
tgcataattagaatgagctctgttgcaggcgtttgttgctcagtcaaacaccgactagtggagggccaaagtattctatcactatggcagccagtattgg |
164 |
Q |
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| T |
14253246 |
tgcatagttagaatgagctctgttgcaggcgtttgttgctcagtcaaacaccgactagtggagggccaaagtattctatcactatggcagccagtattgg |
14253147 |
T |
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| Q |
165 |
tgaaagtggtaattcatcaggcaagacagtgagtcgtttccggacaggaaag |
216 |
Q |
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| T |
14253146 |
tgaaagtggtaattcatcaggcaagacagtgagtcgtttccggacaggaaag |
14253095 |
T |
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 46714632 - 46714549
Alignment:
| Q |
45 |
taataacttcatgttaaacctgcataattagaatgagctctgttgcaggcgtttgttgctcagtcaaacaccgactagtggagg |
128 |
Q |
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| T |
46714632 |
taataacttcgtcttaaacctgcataattagaatgagctccgttgcaggcgttcattgctcagtcaaacaccgattagtggagg |
46714549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 46714511 - 46714443
Alignment:
| Q |
145 |
actatggcagccagtattggtgaaagtggtaattcatcaggcaagacagtgagtcgtttccggacagga |
213 |
Q |
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| T |
46714511 |
actatgaccgccagtattggtgaaagtggtaattcatcaggcaagacagtgagttgtttccagacagga |
46714443 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 20060803 - 20060714
Alignment:
| Q |
70 |
aattagaatgagctctgttgcaggcgtttgttgctcagtcaaacaccgactagtggagggccaaagtattctatcactatggcagccagt |
159 |
Q |
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| T |
20060803 |
aattagaatgagctccgttgcaggcgttccttgctcagtcaagtaccgattagtggaggaccgaagttttctaccactatgacaaccagt |
20060714 |
T |
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