View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10476_high_1 (Length: 546)
Name: NF10476_high_1
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Original strand, 32833723 - 32834242
Alignment:
| Q |
11 |
cacagatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaaga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833723 |
cacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaaga |
32833822 |
T |
|
| Q |
111 |
tcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctctggatcaaagaaacctgcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
32833823 |
tcctccatcctcacccaaaaacaaacctccatctgattcgcaacaaccacattcatcttctgcaccggaacaatctgccaccggatcaaagaaacctgcc |
32833922 |
T |
|
| Q |
211 |
tccactacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcgggaaaacgtgtctccggcggactgacaaaactactctctgaaacgggaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833923 |
tccactacgggacaagatgcctctgcaaccaagcaaactccctcctcatcgggaaaatgtgtctccggcggactgacaaaactactctctgaaacgggaa |
32834022 |
T |
|
| Q |
311 |
aagatgcctctacagcagaagaaggagcctctacacggggaaaagaatcttccacacaagaaaagtcaccatcggcaccggaacaaaaaccaccttctgc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32834023 |
aagatgcctctacagcagaagaaggagcctctacaccgggaaaagaatcttccacacaagaaaagtcaccatcagcaccggaacaaaaaccaccttctgc |
32834122 |
T |
|
| Q |
411 |
tactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgctcctttagccagaact |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32834123 |
tactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgctcctttagccagaact |
32834222 |
T |
|
| Q |
511 |
catcgacttccagggtttct |
530 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32834223 |
catcgacttccagggtttct |
32834242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Original strand, 32840137 - 32840656
Alignment:
| Q |
11 |
cacagatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaaga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840137 |
cacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaaga |
32840236 |
T |
|
| Q |
111 |
tcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctctggatcaaagaaacctgcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32840237 |
tcctccatcctcacccaaaaacaaacctccatctgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctccggatcaaagaaacctgcc |
32840336 |
T |
|
| Q |
211 |
tccactacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcgggaaaacgtgtctccggcggactgacaaaactactctctgaaacgggaa |
310 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840337 |
tccagtacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcggcaaaacgtgtctccggcggactgacaaaactactctctgaaacgggaa |
32840436 |
T |
|
| Q |
311 |
aagatgcctctacagcagaagaaggagcctctacacggggaaaagaatcttccacacaagaaaagtcaccatcggcaccggaacaaaaaccaccttctgc |
410 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840437 |
aagatgcctctacagcagaagaaggtgcctctacaccgggaaaagaatcttccacacaagaaaagtcaccatcggcaccggaacaaaaaccaccttctgc |
32840536 |
T |
|
| Q |
411 |
tactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgctcctttagccagaact |
510 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32840537 |
tactgaatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcagatgctcctttagccagaact |
32840636 |
T |
|
| Q |
511 |
catcgacttccagggtttct |
530 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32840637 |
catcgacttccagggtttct |
32840656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 29605323 - 29605472
Alignment:
| Q |
11 |
cacagatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaaga |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||| |
|
|
| T |
29605323 |
cacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactgattaaccaaagaaacctcaaga |
29605422 |
T |
|
| Q |
111 |
tcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccac |
160 |
Q |
| |
|
|| ||||||| |||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
29605423 |
tcttccatccaatcccaaaaatcaacctccatctgattcacaacaaccac |
29605472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 415 - 522
Target Start/End: Complemental strand, 31682760 - 31682656
Alignment:
| Q |
415 |
ggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgctcctttagccagaactcatc |
514 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
31682760 |
ggatcaaagctcattgtcataccttcaaggaaacctagt---ctccaagacacaccaatttatcatcctcaatcggatgctcctttagccggaactcatc |
31682664 |
T |
|
| Q |
515 |
gacttcca |
522 |
Q |
| |
|
||||||| |
|
|
| T |
31682663 |
aacttcca |
31682656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 28405835 - 28405748
Alignment:
| Q |
25 |
aataacatttcacattttccatattctcttttctcagaaagaa-agaaacctctcaacatgactcaatcaccaaagaactctcaagat |
111 |
Q |
| |
|
||||||| |||||||||| ||| || |||| | |||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
28405835 |
aataacacttcacattttgtatactcaattttgtgagaaagaagagaaacctcttaacatggctcaatcaccaaagaacgatcaagat |
28405748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 19946924 - 19946835
Alignment:
| Q |
19 |
aatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagat |
111 |
Q |
| |
|
||||| |||||||||||||||||| |||| |||| || | ||||||||| ||| |||||||||||||| | ||| |||||||| | |||||| |
|
|
| T |
19946924 |
aatcacaataacatttcacatttttcata--ctctcttgtgagaaagaaa-aaaactctcaacatgactgattcagcaaagaacacccaagat |
19946835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University