View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10476_high_12 (Length: 242)

Name: NF10476_high_12
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10476_high_12
NF10476_high_12
[»] chr4 (3 HSPs)
chr4 (25-232)||(30406558-30406766)
chr4 (25-237)||(7408615-7408828)
chr4 (28-240)||(53244192-53244405)
[»] chr2 (2 HSPs)
chr2 (25-242)||(34596834-34597052)
chr2 (63-237)||(41221316-41221491)
[»] chr3 (4 HSPs)
chr3 (25-237)||(22911019-22911232)
chr3 (28-129)||(53507758-53507860)
chr3 (25-145)||(13994970-13995091)
chr3 (29-106)||(30992299-30992376)
[»] scaffold0012 (1 HSPs)
scaffold0012 (25-238)||(234234-234438)
[»] chr1 (1 HSPs)
chr1 (50-242)||(37707085-37707278)
[»] chr7 (4 HSPs)
chr7 (25-142)||(32467208-32467326)
chr7 (153-232)||(26752674-26752753)
chr7 (29-164)||(25017461-25017597)
chr7 (180-234)||(32467324-32467378)
[»] chr5 (1 HSPs)
chr5 (30-103)||(41915400-41915471)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 30406558 - 30406766
Alignment:
Q  25 cagcggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaatca-cggatgaattcgtctcc 123  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  30406558 cagcggaagcaaaccctccgatggctccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaatccgcggatgaatttgtctcc 30406657  T
Q  124 ctaacaaaatgctttaactgaatgttccaactcctttgcaataaatcttgcacattactaataattgccgcataatgatgccagggattcatcatggttg 223  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30406658 ctaacaaaatgctttaactgaatgttccaactccattgcaataaatcttgcacattactaataattgccgcataatgatgcgagggattcatcatggttg 30406757  T
Q  224 aaactaact 232  Q
    |||||||||    
T  30406758 aaactaact 30406766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 7408828 - 7408615
Alignment:
Q  25 cagcggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaat-cacggatgaattcgtctcc 123  Q
    ||||||||| |||||||||| ||| ||||||||||||| |||||| |||||||||| |||||||| |||||| ||||||| |||||| ||||| |  |||    
T  7408828 cagcggaagtaaaccctccgatggctccaaaaactcacaccaaatctcagaacttggagctcctaatttagccatgaaatccacggacgaatttgaatcc 7408729  T
Q  124 ctaacaaaatgctttaactgaatgttccaactcctttgcaataaatcttgcacattactaataattgccgcataatgatgccagggattcatcatggttg 223  Q
    || | | |||| | |||||||| | |||| || |||||||  ||||| ||||||||| | || |||||||||||||| ||||| ||||||| ||||||||    
T  7408728 ctcatagaatgttgtaactgaacgctccatctactttgcagcaaatcctgcacattattgatgattgccgcataatggtgccaaggattcaccatggttg 7408629  T
Q  224 aaactaactaaaca 237  Q
    ||||||||| ||||    
T  7408628 aaactaactgaaca 7408615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 53244192 - 53244405
Alignment:
Q  28 cggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaatca-cggatgaattcgtctcccta 126  Q
    |||||||||||  || ||||  ||||||| |||||  ||||| |||||| ||| ||| ||||||||||| || |||||| ||||  | || |  |||||     
T  53244192 cggaagcaaactttctggtgactccaaaatctcacatcaaatctcagaatttgtagcgcctagtttagccataaaatcagcggacaattttgcatccctc 53244291  T
Q  127 acaaaatgctttaactgaatgttccaactcctttgcaataaatcttgcacattactaataattgccgcataatgatgccagggattcatcatggttgaaa 226  Q
    ||| |||| |||||||  | | |||| ||| |||||||||||||||| |||||||| |||||||  |||||| |||| ||  |||||| ||||||| |||    
T  53244292 acataatgttttaacttgacgctccagctcatttgcaataaatcttgtacattactcataattgttgcataacgatgtcaatgattcaacatggttaaaa 53244391  T
Q  227 ctaactaaacagcc 240  Q
    || ||| |||||||    
T  53244392 ctgactgaacagcc 53244405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 34597052 - 34596834
Alignment:
Q  25 cagcggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaatc-acggatgaattcgtctcc 123  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  34597052 cagcggaagcaaaccctctggtggctccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaatccacggacggattcgtctcc 34596953  T
Q  124 ctaacaaaatgctttaactgaatgttccaactcctttgcaataaatcttgcacattactaataattgccgcataatgatgccagggattcatcatggttg 223  Q
    |||||| |||||||||||||||   |||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  34596952 ctaacagaatgctttaactgaacaatccaactcctttgcaataaatcctgcacatttctaataattgacgcataatgatgccagggattcaccatggttg 34596853  T
Q  224 aaactaactaaacagccag 242  Q
    ||| ||||| |||||||||    
T  34596852 aaattaactgaacagccag 34596834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 237
Target Start/End: Complemental strand, 41221491 - 41221316
Alignment:
Q  63 gccaaatatcagaacttgcagctcctagtttagcaatgaaatca-cggatgaattcgtctccctaacaaaatgctttaactgaatgttccaactcctttg 161  Q
    ||||||| ||| |||||||||| ||||||||||| ||||||||  | || ||||||| ||| || |||| ||||||||||   | | || | || |||||    
T  41221491 gccaaatctcaaaacttgcagcacctagtttagccatgaaatccgctgacgaattcgcctctctcacaacatgctttaaccagacgctctagcttctttg 41221392  T
Q  162 caataaatcttgcacattactaataattgccgcataatgatgccagggattcatcatggttgaaactaactaaaca 237  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||   |||||||||| |||||||||||| ||||    
T  41221391 caataaattctgcacattactgataattgccgcataatgatgccaaaaattcatcatgattgaaactaactgaaca 41221316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 22911019 - 22911232
Alignment:
Q  25 cagcggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaatca-cggatgaattcgtctcc 123  Q
    ||||||||||||||||||  | || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||  |||| ||||| ||||||    
T  22911019 cagcggaagcaaaccctctagaggctccaaaaactcatgccaaatatcagaacttgtagctcctagtttagcaatgaaatccgcggacgaatttgtctcc 22911118  T
Q  124 ctaacaaaatgctttaactgaatgttccaactcctttgcaataaatcttgcacattactaataattgccgcataatgatgccagggattcatcatggttg 223  Q
    |||||| |||||||||| |||| ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  22911119 ctaacagaatgctttaattgaacgttccaattcctttgcaataaatcctgcacattactaataattgacgcataatgatgccagggattcaccatggttg 22911218  T
Q  224 aaactaactaaaca 237  Q
    ||||||||| ||||    
T  22911219 aaactaactgaaca 22911232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 53507758 - 53507860
Alignment:
Q  28 cggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaat-cacggatgaattcgtctcccta 126  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  53507758 cggaagcaaaccttccggtggctccaaaaactcacgccaaatatcagagcttgcagctcctagtttagcaatgaaatccgcggacgaattcgtctcccta 53507857  T
Q  127 aca 129  Q
    |||    
T  53507858 aca 53507860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 13994970 - 13995091
Alignment:
Q  25 cagcggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaatca-cggatgaattcgtctcc 123  Q
    ||||||||| || || || ||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |||| ||||||  ||||    
T  13994970 cagcggaagtaagccttctggtggctccaaaaactcacgccaaatatcagaacttgcagctcctaatttagccatgaaataagcggacgaattcacctcc 13995069  T
Q  124 ctaacaaaatgctttaactgaa 145  Q
    || ||||| ||||||| |||||    
T  13995070 ctcacaaattgctttacctgaa 13995091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 30992299 - 30992376
Alignment:
Q  29 ggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaatca 106  Q
    |||||||| ||||  ||||| | || ||| ||||||||||| |||| ||||| || |||||||||||| |||||||||    
T  30992299 ggaagcaagccctttggtggcttcagaaattcacgccaaatctcagtacttgtagttcctagtttagccatgaaatca 30992376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 234438 - 234234
Alignment:
Q  25 cagcggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaatca-cggatgaattcgtctcc 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||          ||||||||||||||||||||||||  || | ||||| ||||||    
T  234438 cagcggaagcaaaccctccggtggctccaaaaactcacgccaaacat----------agctcctagtttagcaatgaaatccgcgaacgaattggtctcc 234349  T
Q  124 ctaacaaaatgctttaactgaatgttccaactcctttgcaataaatcttgcacattactaataattgccgcataatgatgccagggattcatcatggttg 223  Q
    |||||| ||||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  234348 ctaacagaatgctttaactggacgctccaactcctttgcaaaaaatcttgcacattactaataattgccgcataatgatgccaaggattcaccatggttg 234249  T
Q  224 aaactaactaaacag 238  Q
    ||||||||| |||||    
T  234248 aaactaactgaacag 234234  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 242
Target Start/End: Complemental strand, 37707278 - 37707085
Alignment:
Q  50 tccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaatca-cggatgaattcgtctccctaacaaaatgctttaactgaatgt 148  Q
    |||| ||||||||| ||||| | || ||||||||||||||||||||| ||||||||| | ||  |||||| |||||| ||| |||||||||||||   |     
T  37707278 tccagaaactcacgtcaaatctaagtacttgcagctcctagtttagccatgaaatcagcagaccaattcgcctccctcacagaatgctttaactgggcgc 37707179  T
Q  149 tccaactcctttgcaataaatcttgcacattactaataattgccgcataatgatgccagggattcatcatggttgaaactaactaaacagccag 242  Q
     ||| |||||||| |||||||| ||||||||||| || |||| ||||||||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  37707178 gccagctcctttgtaataaatcctgcacattactgatgattgtcgcataatgatgccaaggattcaccatggttgaaactaactgaacaaccag 37707085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 32467208 - 32467326
Alignment:
Q  25 cagcggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaat-cacggatgaattcgtctcc 123  Q
    |||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||| |||||||| |||||||||||||| | |||| ||||||||||||    
T  32467208 cagcggaagcaaactctccggtggctccaaaaactcactccaaatatcataacttgtagctcctaatttagcaatgaaatccgcggacgaattcgtctcc 32467307  T
Q  124 ctaacaaaatgctttaact 142  Q
    ||| || ||||||||||||    
T  32467308 ctatcagaatgctttaact 32467326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 26752674 - 26752753
Alignment:
Q  153 actcctttgcaataaatcttgcacattactaataattgccgcataatgatgccagggattcatcatggttgaaactaact 232  Q
    |||||||| ||||||||||||||||||| | |||||| ||||||||| ||||||  |||||| ||||||| |||||||||    
T  26752674 actcctttacaataaatcttgcacattaatgataattaccgcataattatgccaaagattcaccatggtttaaactaact 26752753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 25017597 - 25017461
Alignment:
Q  29 ggaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaat-cacggatgaattcgtctccctaa 127  Q
    |||| ||||| ||| ||||| |||||||||||||||||||| | | ||||| ||| ||||| |||||| || |||| ||| || ||||||| ||| || |    
T  25017597 ggaaacaaactctctggtggctccaaaaactcacgccaaatcttataactttcagatcctaatttagccataaaatccacagacgaattcgcctctctca 25017498  T
Q  128 caaaatgctttaactgaatgttccaactcctttgcaa 164  Q
    || |||| |||||||||| | |||| |||||||||||    
T  25017497 cagaatgttttaactgaacgctccagctcctttgcaa 25017461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 32467324 - 32467378
Alignment:
Q  180 actaataattgccgcataatgatgccagggattcatcatggttgaaactaactaa 234  Q
    ||||||||||| ||||| |||||| || ||| ||| |||||||||||||||||||    
T  32467324 actaataattgacgcatgatgatgtcaaggactcaccatggttgaaactaactaa 32467378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 41915471 - 41915400
Alignment:
Q  30 gaagcaaaccctccggtggttccaaaaactcacgccaaatatcagaacttgcagctcctagtttagcaatgaaa 103  Q
    ||||||||||||  ||||||||||||||||||||||||   ||||||||||||||||||||||| || ||||||    
T  41915471 gaagcaaaccctttggtggttccaaaaactcacgccaa--ttcagaacttgcagctcctagtttggccatgaaa 41915400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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