View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10476_high_13 (Length: 240)
Name: NF10476_high_13
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_high_13 |
 | |
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| [»] chr6 (8 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 20086360 - 20086137
Alignment:
| Q |
17 |
actgacaacaacaggaaatttgccacaaaagaagcaaagatttctggatttcagaccctttactgcctagctcagtgcacgccggacttgtcccctaatg |
116 |
Q |
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||||||||||||| ||| ||||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||| || || |
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| T |
20086360 |
actgacaacaacaagaagtttgccacaaaagaagcaaggatttctgaatctcagaccctttactgtctagctcagtgcacgccggacttgtcacccggtg |
20086261 |
T |
|
| Q |
117 |
attgcagaacctgtctcaatgatgctattggatctcttccacagtgttgtgatggaaagcagggtgggagagttctttttcctagctgtaatgttaggta |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20086260 |
attgcagaacctgtctcaatagtgctattgagaaacttcctagctgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatgttaggta |
20086161 |
T |
|
| Q |
217 |
tgaactatatcctttttataggtc |
240 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
20086160 |
tgaattatatcctttttataggtc |
20086137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 22204810 - 22205026
Alignment:
| Q |
24 |
acaacaggaaatttgccacaaaagaagcaaagatttctggatttcagaccctttactgcctagctcagtgcacgccggacttgtcccctaatgattgcag |
123 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
22204810 |
acaacaagaaatttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcacccggtgattgcag |
22204909 |
T |
|
| Q |
124 |
aacctgtctcaatgatgctattggatctcttccacagtgttgtgatggaaagcagggtgggagagttctttttcctagctgtaatgttaggtatgaacta |
223 |
Q |
| |
|
||||||||| ||| |||||||| ||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
22204910 |
aacctgtcttaatagtgctattgaggaacttcctagctgttgtgatggaaaggtgggtgcgagagttgtttttcctagctgtaatattaggtatgaacta |
22205009 |
T |
|
| Q |
224 |
tatcctttttataggtc |
240 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
22205010 |
tatcctttttataggtc |
22205026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 24385083 - 24385234
Alignment:
| Q |
84 |
tagctcagtgcacgccggacttgtcccctaatgattgcagaacctgtctcaatgatgctattggatctcttccacagtgttgtgatggaaagcagggtgg |
183 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| | |
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|
| T |
24385083 |
tagctcagtgcacgccagacttgtcccctaatgattgcagaacctgtctcaatagtgctattgaatctcttccactatgttgtgatggaaagcagggt-g |
24385181 |
T |
|
| Q |
184 |
gagagttctttttcctagctgtaatgttaggtatgaactatatcctttttata |
236 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
24385182 |
gagagttccttttcctagctgtaacattaggtatgaactatttcctttttata |
24385234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 20205630 - 20205457
Alignment:
| Q |
67 |
tcagaccctttactgcctagctcagtgcacgccggacttgtcccctaatgattgcagaacctgtctcaatgatgctattggatctcttccacagtgttgt |
166 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |||||||| || || || ||||| |
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| T |
20205630 |
tcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaacctgtctcagtagtgctattgagaaagtttcaaagagttgt |
20205531 |
T |
|
| Q |
167 |
gatggaaagcagggtgggagagttctttttcctagctgtaatgttaggtatgaactatatcctttttataggtc |
240 |
Q |
| |
|
||||||||| ||| |||||| |||||| ||||||||||||||| ||||||||| ||||||| ||||||||||| |
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|
| T |
20205530 |
gatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtc |
20205457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 22099653 - 22099480
Alignment:
| Q |
67 |
tcagaccctttactgcctagctcagtgcacgccggacttgtcccctaatgattgcagaacctgtctcaatgatgctattggatctcttccacagtgttgt |
166 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |||||||| || || || ||||| |
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|
| T |
22099653 |
tcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaacctgtctcagtagtgctattgagaaagtttcaaagagttgt |
22099554 |
T |
|
| Q |
167 |
gatggaaagcagggtgggagagttctttttcctagctgtaatgttaggtatgaactatatcctttttataggtc |
240 |
Q |
| |
|
||||||||| ||| |||||| |||||| ||||||||||||||| ||||||||| ||||||| ||||||||||| |
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| T |
22099553 |
gatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtc |
22099480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 21972194 - 21972021
Alignment:
| Q |
67 |
tcagaccctttactgcctagctcagtgcacgccggacttgtcccctaatgattgcagaacctgtctcaatgatgctattggatctcttccacagtgttgt |
166 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||| ||||| ||||||||||||||||||||||||| | |||||||| | ||| |||| | ||| |
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|
| T |
21972194 |
tcagaccctttacagtctagctcagtgcacgctggatttgtcgcctaatgattgcagaacctgtctcactagtgctattgagacactttcacaaagctgt |
21972095 |
T |
|
| Q |
167 |
gatggaaagcagggtgggagagttctttttcctagctgtaatgttaggtatgaactatatcctttttataggtc |
240 |
Q |
| |
|
| ||||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
21972094 |
gttggaaaggttggtgggagatttctttatcctagctgtaatgttaggtatgaattatatccattttataggtc |
21972021 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 20238236 - 20238053
Alignment:
| Q |
54 |
agatttctggatttcagaccctttactgcctagctcagtgcacgccggacttgtcccctaatgattgcagaacctgtctcaatgatgctattggatctct |
153 |
Q |
| |
|
||||||||| || ||| || |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||| | ||||||| | || |
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|
| T |
20238236 |
agatttctgaatctcaaacgctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcctcggttgtgctattaggaaact |
20238137 |
T |
|
| Q |
154 |
tccacagtgt-tgtgatggaaagcagggtgggagagttctttttcctagctgtaatgttaggtatgaactatatcctttttatag |
237 |
Q |
| |
|
| || | ||| | |||||||||||||||||||||| | | | |||||| |||||| |||||||||| ||||||||||||||||| |
|
|
| T |
20238136 |
ttcaaa-tgtgtatgatggaaagcagggtgggagaaatttatatcctagttgtaatattaggtatgagctatatcctttttatag |
20238053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 22132220 - 22132037
Alignment:
| Q |
54 |
agatttctggatttcagaccctttactgcctagctcagtgcacgccggacttgtcccctaatgattgcagaacctgtctcaatgatgctattggatctct |
153 |
Q |
| |
|
||||||||| || ||| || |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||| | ||||||| | || |
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|
| T |
22132220 |
agatttctgaatctcaaacgctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcctcggttgtgctattaggaaact |
22132121 |
T |
|
| Q |
154 |
tccacagtgt-tgtgatggaaagcagggtgggagagttctttttcctagctgtaatgttaggtatgaactatatcctttttatag |
237 |
Q |
| |
|
| || | ||| | |||||||||||||||||||||| | | | |||||| |||||| |||||||||| ||||||||||||||||| |
|
|
| T |
22132120 |
ttcaaa-tgtgtatgatggaaagcagggtgggagaaatttatatcctagttgtaatattaggtatgagctatatcctttttatag |
22132037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 47683 - 47855
Alignment:
| Q |
68 |
cagaccctttactgcctagctcagtgcacgccggacttgtcccctaatgattgcagaacctgtctcaatgatgctattggatctcttccacagtgttgtg |
167 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| || |||||||| | |||| | ||| || || |
|
|
| T |
47683 |
cagaccctttactgtctagctcagtgcacgccagacttgtctcctaacaattgcagaacctgtctctatactgctattgattttcttgctcagctttttg |
47782 |
T |
|
| Q |
168 |
atggaaagcagggtgggagagttctttttcctagctgtaatgttaggtatgaactatatcctttttataggtc |
240 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47783 |
atggaaagcagggtgggatggttttttttcctagctgtaatgttaggtatgaactatatcctttttataggtc |
47855 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 5203 - 5376
Alignment:
| Q |
67 |
tcagaccctttactgcctagctcagtgcacgccggacttgtcccctaatgattgcagaacctgtctcaatgatgctattggatctcttccacagtgttgt |
166 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||| || |||||| | |||| |
|
|
| T |
5203 |
tcagaccctgtactgtctagaacagtgcacgccggacttgtcccctaacaattgcagaacctgtctccatagagctattgaatatcttcctatggtttgt |
5302 |
T |
|
| Q |
167 |
gatggaaagcagggtgggagagttctttttcctagctgtaatgttaggtatgaactatatcctttttataggtc |
240 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5303 |
gatggaaaggagggtgggagagttgtttttcctagctgtaatattaggtatgaactatatcctttttataggtc |
5376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 16259 - 16086
Alignment:
| Q |
67 |
tcagaccctttactgcctagctcagtgcacgccggacttgtcccctaatgattgcagaacctgtctcaatgatgctattggatct-cttccacagtgttg |
165 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| || |||||||| |||| ||||| | |||| | |
|
|
| T |
16259 |
tcagaccctatactgtctagctcagtgcacgccagacttgtctcctaacaattgcagaacctgtctctatactgctattg-atcttcttcctctgtgtgg |
16161 |
T |
|
| Q |
166 |
tgatggaaagcagggtgggagagttctttttcctagctgtaatgttaggtatgaactatatcctttttataggtc |
240 |
Q |
| |
|
| |||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16160 |
ttatggaaaggtgggtgggagatttcttttgcctagctgtaatgttaggtatgaactatatcctttttataggtc |
16086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 9674711 - 9674592
Alignment:
| Q |
116 |
gattgcagaacctgtctcaatgatgctattggatctcttccacagtgttgtgatggaaagcagggtgggagagttctttttcctagctgtaatgttaggt |
215 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| | |
|
|
| T |
9674711 |
gattgcagaacgtgtcttagtgatgctattggagctcttccacagtgttgtgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagat |
9674612 |
T |
|
| Q |
216 |
atgaactatatcctttttat |
235 |
Q |
| |
|
||||| |||| ||||||||| |
|
|
| T |
9674611 |
atgaattataccctttttat |
9674592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 47635164 - 47635283
Alignment:
| Q |
116 |
gattgcagaacctgtctcaatgatgctattggatctcttccacagtgttgtgatggaaagcagggtgggagagttctttttcctagctgtaatgttaggt |
215 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| | |
|
|
| T |
47635164 |
gattgcagaacgtgtcttagtgatgctattggagctcttccacagtgttgtgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagat |
47635263 |
T |
|
| Q |
216 |
atgaactatatcctttttat |
235 |
Q |
| |
|
||||| |||| ||||||||| |
|
|
| T |
47635264 |
atgaattataccctttttat |
47635283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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