View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10476_high_4 (Length: 427)

Name: NF10476_high_4
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10476_high_4
NF10476_high_4
[»] chr8 (4 HSPs)
chr8 (231-364)||(37193273-37193406)
chr8 (231-364)||(37182143-37182274)
chr8 (145-177)||(3193523-3193555)
chr8 (237-313)||(29461186-29461262)
[»] chr3 (2 HSPs)
chr3 (231-365)||(21105366-21105500)
chr3 (231-297)||(42036775-42036841)
[»] scaffold0495 (1 HSPs)
scaffold0495 (233-360)||(10718-10845)
[»] chr6 (2 HSPs)
chr6 (233-360)||(10233990-10234117)
chr6 (290-358)||(4619835-4619903)
[»] chr2 (1 HSPs)
chr2 (143-177)||(17854474-17854508)
[»] scaffold0288 (1 HSPs)
scaffold0288 (290-358)||(969-1037)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 37193406 - 37193273
Alignment:
Q  231 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 330  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||||||  |||    
T  37193406 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccactgtgatttt 37193307  T
Q  331 tcaccatggttttgtgagtttccaaacacaggct 364  Q
    ||||| ||||||  ||||||||||||||||||||    
T  37193306 tcaccgtggtttcatgagtttccaaacacaggct 37193273  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 37182274 - 37182143
Alignment:
Q  231 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 330  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||  ||  |||    
T  37182274 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccac--tgatttt 37182177  T
Q  331 tcaccatggttttgtgagtttccaaacacaggct 364  Q
    ||||| || |||  ||||||||||||||||||||    
T  37182176 tcaccgtgttttcatgagtttccaaacacaggct 37182143  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 3193555 - 3193523
Alignment:
Q  145 ttaaataatttagagcaactagtttaatctatt 177  Q
    |||||||| ||||||||||||||||||||||||    
T  3193555 ttaaataaattagagcaactagtttaatctatt 3193523  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 29461186 - 29461262
Alignment:
Q  237 ttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagcttt 313  Q
    |||||||||||||||||||||  ||||||| | || | |||| ||| |||| |||||||||||| |  |||||||||    
T  29461186 ttgtgcggtgagtgaccgctaccgcacgtttagagtctatcttaccatggtattgagaagctagttggtgtagcttt 29461262  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 21105500 - 21105366
Alignment:
Q  231 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 330  Q
    |||||||||||| |||||||||||||| |||| ||| |||| ||||||||||||||| || ||||||||| |  |||||||||  ||| || ||||||||    
T  21105500 gtttgtttgtgccgtgagtgaccgctactgcatgtttaaagtcaatctcaccgtggtatttagaagctagttggtgtagctttacgccaaccgtgccttt 21105401  T
Q  331 tcaccatggttttgtgagtttccaaacacaggcta 365  Q
    ||||||||||||||| ||||| |||||||| ||||    
T  21105400 tcaccatggttttgttagttttcaaacacatgcta 21105366  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 42036841 - 42036775
Alignment:
Q  231 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagc 297  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  42036841 gtttatttgtgcggtgagtgaccgctaatgcacattcaaagtcaatatcaccgtggttttgagaagc 42036775  T

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Target: scaffold0495 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 360
Target Start/End: Original strand, 10718 - 10845
Alignment:
Q  233 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 332  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10718 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10817  T
Q  333 accatggttttgtgagtttccaaacaca 360  Q
    ||||||||||||||||||| ||||||||    
T  10818 accatggttttgtgagttttcaaacaca 10845  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 360
Target Start/End: Original strand, 10233990 - 10234117
Alignment:
Q  233 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 332  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10233990 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10234089  T
Q  333 accatggttttgtgagtttccaaacaca 360  Q
    ||||||||||||||||||| ||||||||    
T  10234090 accatggttttgtgagttttcaaacaca 10234117  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 4619903 - 4619835
Alignment:
Q  290 tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca 358  Q
    |||||||||||||  |||||||||  ||| || || |||||||||| ||||||||| ||| ||||||||    
T  4619903 tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca 4619835  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 17854508 - 17854474
Alignment:
Q  143 aattaaataatttagagcaactagtttaatctatt 177  Q
    |||||||||| ||||||||||||||||||||||||    
T  17854508 aattaaataaattagagcaactagtttaatctatt 17854474  T

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Target: scaffold0288 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 969 - 1037
Alignment:
Q  290 tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca 358  Q
    |||||||||||||  |||||||||  ||| || || |||||||||| ||||||||| ||| ||||||||    
T  969 tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca 1037  T

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