View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10476_low_10 (Length: 377)
Name: NF10476_low_10
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 5160131 - 5160497
Alignment:
| Q |
1 |
tcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcactcctacttttctttcttatcaatacaatttgatgttggtggacctttccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160131 |
tcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccg |
5160230 |
T |
|
| Q |
101 |
gaaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160231 |
gaaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatttggatatatcaaacaacaatttaagtgggttgctaacaaa |
5160330 |
T |
|
| Q |
201 |
agattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnnctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5160331 |
agattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagataaaaaaactt |
5160430 |
T |
|
| Q |
301 |
ttgctcttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccacaggttctg |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5160431 |
ttgctcttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccacagattctg |
5160497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 364
Target Start/End: Original strand, 5182377 - 5182739
Alignment:
| Q |
2 |
cactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcactcctacttttctttcttatcaatacaatttgatgttggtggacctttccgg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |||||||| |||||||| || ||||||| ||| | |
|
|
| T |
5182377 |
cactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattcctacttttctttcatatcaatataatttgatattcttggacctctccag |
5182476 |
T |
|
| Q |
102 |
aaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaa |
201 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
5182477 |
aaacaatttagttggttcattcccaagttggttgatagataatcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaa |
5182576 |
T |
|
| Q |
202 |
gattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttt |
301 |
Q |
| |
|
||| ||| | |||||||||| |||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5182577 |
gatattggtatattccttcctagtgttaagtatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttg |
5182676 |
T |
|
| Q |
302 |
tgctcttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccacaggtt |
364 |
Q |
| |
|
| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
5182677 |
agtacttggacctctctcagaatcatttctcaggtgagttacctaaacaactggccacaggtt |
5182739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 4 - 360
Target Start/End: Original strand, 5173050 - 5173400
Alignment:
| Q |
4 |
ctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcactcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||| || | | |
|
|
| T |
5173050 |
ctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagca |
5173149 |
T |
|
| Q |
104 |
acaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaaga |
203 |
Q |
| |
|
|||| || ||||||||| |||||||||||||||| ||||| || ||| | ||| ||||| |||||||||||||||| ||||| ||||| || || |
|
|
| T |
5173150 |
acaatattgttggctcactcccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaa-- |
5173247 |
T |
|
| Q |
204 |
ttttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttg |
303 |
Q |
| |
|
||| |||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
5173248 |
----gatatattccttccaagtattacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgag |
5173343 |
T |
|
| Q |
304 |
ctcttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccaca |
360 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5173344 |
tactttgacctctctcataataatttctcaggtgagttacctaaacaactggccaca |
5173400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 5195773 - 5196139
Alignment:
| Q |
1 |
tcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcactcctacttttctttcttatcaatacaatttgatgttggtggacctttccg |
100 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||| |||||| | | ||| ||| ||| |
|
|
| T |
5195773 |
tcacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattcctacttttctttcatatcaatataatttggtatacttggtcctctcca |
5195872 |
T |
|
| Q |
101 |
gaaacaaaatagttggctcatccccaagt---tggttgatacataatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaac |
197 |
Q |
| |
|
| ||||| ||| ||||||| ||||||| ||||||||||||||| || |||| | ||| |||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
5195873 |
gcaacaatataaatggctcactcccaagtaattggttgatacataatgatgacatgatatatttggatatatcaaacaacaatttgagtggtttgcttcc |
5195972 |
T |
|
| Q |
198 |
aaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnn |
297 |
Q |
| |
|
||||||| | | | |||||||||| | || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195973 |
aaaagatatcggtatattccttcctaatgttacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaa |
5196072 |
T |
|
| Q |
298 |
cttttgctcttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccacaggtt |
364 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
5196073 |
cttcaactcttggacttctctcaaaatcatttctcaggtgagttacctaaacaactggccacaggtt |
5196139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 2 - 270
Target Start/End: Complemental strand, 4856954 - 4856686
Alignment:
| Q |
2 |
cactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcactcctacttttctttcttatcaatacaatttgatgttggtggacctttccgg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||||| |||||| | || ||||||| ||| | |
|
|
| T |
4856954 |
cactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctacttttctttcatatcaatataatttggtattcttggacctctccag |
4856855 |
T |
|
| Q |
102 |
aaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaa |
201 |
Q |
| |
|
|||||| ||||||| |||| |||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
4856854 |
aaacaatttagttggttcattcccaagttcgttgatagataatcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaa |
4856755 |
T |
|
| Q |
202 |
gattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatata |
270 |
Q |
| |
|
||| ||| | |||||||||| |||| ||| | |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4856754 |
gatattggtatattccttcctagtgttacctatttgaacatttcatggaatagctttgaaggaaatata |
4856686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 2 - 364
Target Start/End: Original strand, 5213937 - 5214296
Alignment:
| Q |
2 |
cactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcactcctacttttctttcttatcaatacaatttgatgttggtggacctttccgg |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| | |||||| ||| ||||||| ||| | |
|
|
| T |
5213937 |
cactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatatagtttgatattgatggacctatccag |
5214036 |
T |
|
| Q |
102 |
aaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaa |
201 |
Q |
| |
|
|||||| | ||||| | || |||||| ||||| |||||| | | || || ||| |||||||||||| ||||| ||||||||| || || ||||| |
|
|
| T |
5214037 |
caacaaattggttggtttattcccaagatggttcatacattcttct---atgaaatatttggatatatcaatcaacagtttaagtggttttcttccaaaa |
5214133 |
T |
|
| Q |
202 |
gattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttt |
301 |
Q |
| |
|
||| ||| | |||||||||| |||| ||| | |||| ||||||| |||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5214134 |
gatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatataccttcatcaattggtaagatgaaaaaacttg |
5214233 |
T |
|
| Q |
302 |
tgctcttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccacaggtt |
364 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
5214234 |
agtccttggacctctctcataatcatttctcaggtgagttacctaaacaactggccacaggtt |
5214296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 357
Target Start/End: Complemental strand, 4842475 - 4842125
Alignment:
| Q |
4 |
ctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcactcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||| || | | |
|
|
| T |
4842475 |
ctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgatagtgatggacctctctagca |
4842376 |
T |
|
| Q |
104 |
acaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaaga |
203 |
Q |
| |
|
|||| | |||||||| |||||||||||||||| ||||| | ||| | ||| ||||| |||||||||||||||| ||||| ||||| || |||| |
|
|
| T |
4842375 |
acaata---ttggctcactcccaagttggttgataaataatgttggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaaga |
4842279 |
T |
|
| Q |
204 |
ttttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttg |
303 |
Q |
| |
|
| ||| | |||||||||| |||| ||| | |||| ||||||| |||| |||||||||||||||||||||||||||| ||||||| ||| | |
|
|
| T |
4842278 |
tattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatataccttcatcaatttgtaagatgaaaaaacttaag |
4842179 |
T |
|
| Q |
304 |
ctcttggacctctctcataatcatttctcgggtgagttaccaaaacaactggcc |
357 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
4842178 |
tacttggacctctctcagaatcatttctcaggtgagttacctaaacaactggcc |
4842125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 7142324 - 7142598
Alignment:
| Q |
15 |
aaattgcaacctaaacaaggacaaaggaagtgtcactcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagtt |
114 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| ||||| |||| |||| |||||| | |||||| || ||||||| ||| ||||||| |||||| |
|
|
| T |
7142324 |
aaattgcaaccaaaacatggacaaaggaaatgtcattcctagttttttttcatatcaacataatttggcattcttggacctctccagaaacaatatagtt |
7142423 |
T |
|
| Q |
115 |
ggctcatccccaag---ttggttgatacataatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatt |
211 |
Q |
| |
|
|||||| |||||| |||||||||||||||| || || | || |||||||||||||||||||||||||||| ||||| || ||||| ||| | |
|
|
| T |
7142424 |
ggctcactcccaagaaattggttgatacataatgatgggatacaacatttggatatatcaaacaacaatttaagtggtttgcttccagaagatattggta |
7142523 |
T |
|
| Q |
212 |
tattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggta |
286 |
Q |
| |
|
|||||||||| |||| | | |||||||||||| |||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
7142524 |
tattccttcctagtgttgactatctgaacttttcattgaatagctttcaaggaaatataccttaatcaattggta |
7142598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 5203271 - 5203324
Alignment:
| Q |
91 |
gacctttccggaaacaaaatagttggctcatccccaagttggttgatacataat |
144 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5203271 |
gaccttaccagaaacaaaatagttggctcattcccaagttggttgatacataat |
5203324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 4856676 - 4856621
Alignment:
| Q |
306 |
cttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccacag |
361 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
4856676 |
cttggacctctctcagaatcatttctcaggtgagttacctgaacaattggccacag |
4856621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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