View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10476_low_11 (Length: 341)

Name: NF10476_low_11
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10476_low_11
NF10476_low_11
[»] chr2 (5 HSPs)
chr2 (4-126)||(5305745-5305867)
chr2 (1-126)||(32256627-32256752)
chr2 (1-154)||(42472116-42472267)
chr2 (1-71)||(40355808-40355878)
chr2 (245-299)||(41533533-41533588)
[»] chr4 (10 HSPs)
chr4 (1-126)||(50689548-50689673)
chr4 (1-120)||(13611162-13611280)
chr4 (1-72)||(31763628-31763699)
chr4 (56-301)||(31763382-31763626)
chr4 (1-79)||(7290997-7291075)
chr4 (1-79)||(36444827-36444905)
chr4 (1-71)||(43137870-43137940)
chr4 (1-71)||(47681938-47682008)
chr4 (240-292)||(38069073-38069126)
chr4 (1-71)||(53995453-53995523)
[»] chr7 (9 HSPs)
chr7 (1-120)||(9625966-9626084)
chr7 (4-126)||(26425448-26425570)
chr7 (1-126)||(27157383-27157508)
chr7 (1-119)||(3525780-3525898)
chr7 (1-83)||(21523943-21524020)
chr7 (1-71)||(9458957-9459027)
chr7 (1-122)||(4919975-4920096)
chr7 (240-299)||(3406257-3406317)
chr7 (1-71)||(5734097-5734167)
[»] chr6 (8 HSPs)
chr6 (1-154)||(15055589-15055742)
chr6 (8-126)||(16463822-16463940)
chr6 (1-83)||(22300134-22300216)
chr6 (1-83)||(22293138-22293220)
chr6 (1-76)||(6138851-6138926)
chr6 (1-122)||(4127460-4127581)
chr6 (240-299)||(22292920-22292980)
chr6 (240-299)||(15055836-15055896)
[»] chr1 (4 HSPs)
chr1 (1-186)||(35362152-35362335)
chr1 (1-83)||(13641060-13641142)
chr1 (1-118)||(8770862-8770979)
chr1 (1-71)||(51126888-51126958)
[»] chr8 (10 HSPs)
chr8 (1-154)||(29909576-29909727)
chr8 (1-117)||(6628132-6628251)
chr8 (4-120)||(6635934-6636053)
chr8 (2-126)||(5938120-5938243)
chr8 (243-295)||(6628341-6628394)
chr8 (243-299)||(6636139-6636196)
chr8 (240-279)||(29909440-29909478)
chr8 (93-154)||(18421734-18421793)
chr8 (245-288)||(3294698-3294742)
chr8 (245-288)||(16576543-16576587)
[»] chr3 (2 HSPs)
chr3 (1-142)||(54739449-54739590)
chr3 (240-299)||(54739280-54739340)
[»] chr5 (5 HSPs)
chr5 (1-79)||(5926918-5926996)
chr5 (1-71)||(31223935-31224005)
chr5 (1-71)||(31335605-31335675)
chr5 (244-299)||(34583135-34583191)
chr5 (1-69)||(40897240-40897308)


Alignment Details
Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 5305745 - 5305867
Alignment:
Q  4 aaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgataactt 103  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |  |||||||||||||    
T  5305745 aaacttaatctgataactatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaatatgggtatttaatgataactt 5305844  T
Q  104 aacaagctttcaaacagtaagaa 126  Q
    |||||||||||| ||||||||||    
T  5305845 aacaagctttcagacagtaagaa 5305867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 32256627 - 32256752
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgatta-ttaatgata 99  Q
    |||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || || |||||||||    
T  32256627 ttcaaacttaatctaataatcatacttaaccttaggcatattagtaccaagcctcaaaagtacacacaaatcaaataacaat-atgagtatttaatgata 32256725  T
Q  100 acttaacaagctttcaaacagtaagaa 126  Q
    |||||||||||||||||| ||||||||    
T  32256726 acttaacaagctttcaaatagtaagaa 32256752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 42472267 - 42472116
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgataa 100  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||  | |  |||| |||||    
T  42472267 ttcaaacttaatatgataatcatacttaactttaggcatattagtaccaagcctcgaaagttcacacaaatcaaataacaatatgggtatttaacgataa 42472168  T
Q  101 cttaacaagctttcaaacagtaagaacatgaagaagaaaaatcagcacttaagc 154  Q
    ||||||||| ||||||||| ||||||  |||  ||  |||||||||||||||||    
T  42472167 cttaacaagttttcaaacattaagaaactga--aaacaaaatcagcacttaagc 42472116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40355878 - 40355808
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaat 71  Q
    |||||||||||| | |||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||    
T  40355878 ttcaaacttaatctaataaccatacttgaccttaggcatatcagtagcaagccttaaaagttcacacaaat 40355808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 41533588 - 41533533
Alignment:
Q  245 atataaataataattgtgggaaaatgtaatatact-atatacgggtcggcctgata 299  Q
    ||||||||||||| ||||| |||||||||||||||  ||||||||||||| |||||    
T  41533588 atataaataataaatgtggaaaaatgtaatatactgctatacgggtcggcttgata 41533533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 50689548 - 50689673
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgataa 100  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |  ||||||||||    
T  50689548 ttcaaacttaatctgataatcatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaatatgtgtagttaatgataa 50689647  T
Q  101 cttaacaagctttcaaacagtaagaa 126  Q
    || |||||||||||||||| ||||||    
T  50689648 ctcaacaagctttcaaacaataagaa 50689673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 13611280 - 13611162
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgataa 100  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  | || ||||||||||    
T  13611280 ttcaaacttgatatgataaccatacttaaccttagacatattagtaccaagcctcaaaagttcacacaaatcaaataacaatataggtt-ttaatgataa 13611182  T
Q  101 cttaacaagctttcaaacag 120  Q
    ||||||||||||| ||||||    
T  13611181 cttaacaagcttttaaacag 13611162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 31763699 - 31763628
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatc 72  Q
    |||||| ||||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  31763699 ttcaaaattaatctgataatcatacttaactttagacatattagtaccaagcctcaaaagttcacacaaatc 31763628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 301
Target Start/End: Complemental strand, 31763626 - 31763382
Alignment:
Q  56 aaaagttcacacaaatcaaataacaataacgattattaatgataacttaacaagctttcaaacagtaagaacatgaagaagaaaaatcagcacttaagcn 155  Q
    ||||||||||||||||||||||||||||  |  | ||||||||||| ||||||||||||||||||||||||  |||| |   ||||||| |||||||||     
T  31763626 aaaagttcacacaaatcaaataacaatatggtat-ttaatgataacataacaagctttcaaacagtaagaaactgaaaac--aaaatcaacacttaagca 31763530  T
Q  156 nnnnnnnnntgcataaaatcttcaatgtgatnnnnnnnn-tcaccaactta-tatgagaatttgaatgaaatannnnnnnnnngtcttactatataaata 253  Q
             |||| |||||||||||||| ||         ||||||||||| |||||||||||||| ||| ||          || ||||||||||||||    
T  31763529 ggaaaaaa-tgcaaaaaatcttcaatgtcataaaaaaaaatcaccaacttaatatgagaatttgaaggaactattttttttttgtattactatataaata 31763431  T
Q  254 ataattgtgggaaaatgtaatatact-atatacgggtcggcctgataag 301  Q
    |||| ||||||||||||||||||||| ||||||||| |||| |||||||    
T  31763430 ataaatgtgggaaaatgtaatatactcatatacgggccggcatgataag 31763382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7290997 - 7291075
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataac 79  Q
    |||||||||||| | |||||||||||| ||||||||||||| |||| ||||||| || |||||| | ||||||||||||    
T  7290997 ttcaaacttaatctaataaccatacttgaccttaggcatatcagtagcaagccttaacagttcatagaaatcaaataac 7291075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 36444905 - 36444827
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataac 79  Q
    |||||||||||| | |||||||||||| ||||||| || || |||| |||| || || |||||||||||||||||||||    
T  36444905 ttcaaacttaatctaataaccatacttgaccttagacaaatcagtagcaagtcttaatagttcacacaaatcaaataac 36444827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43137940 - 43137870
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaat 71  Q
    |||||||||||| | |||||||||||| |||||| |||||| |||| ||||||| || ||||| |||||||    
T  43137940 ttcaaacttaatctaataaccatacttgaccttaagcatatcagtagcaagccttaacagttcgcacaaat 43137870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47682008 - 47681938
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaat 71  Q
    |||||||||||| | |||| ||||||| ||||||||||||| |||| ||||| | || |||||||||||||    
T  47682008 ttcaaacttaatctaataatcatacttgaccttaggcatatcagtagcaagctttaacagttcacacaaat 47681938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 38069073 - 38069126
Alignment:
Q  240 ttactatataaataataattgtgggaaaatgtaatatact-atatacgggtcgg 292  Q
    |||||||||||||||||| |||||||||||| ||||||||  ||||||||||||    
T  38069073 ttactatataaataataaatgtgggaaaatgcaatatactcgtatacgggtcgg 38069126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 53995523 - 53995453
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaat 71  Q
    |||||||||||| | |||| ||||||| ||||||||||||| |||| ||||| | || | |||||||||||    
T  53995523 ttcaaacttaatctaataatcatacttgaccttaggcatatcagtagcaagctttaacaattcacacaaat 53995453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 9625966 - 9626084
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgataa 100  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  | || ||||||||||    
T  9625966 ttcaaacttgatatgataaccatacttaaccttagacatattagtaccaagcctcaaaagttcacacaaatcaaataacaatataggtt-ttaatgataa 9626064  T
Q  101 cttaacaagctttcaaacag 120  Q
    ||||||||||||| ||||||    
T  9626065 cttaacaagcttttaaacag 9626084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 26425448 - 26425570
Alignment:
Q  4 aaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgataactt 103  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  | |  |||||||||||||    
T  26425448 aaacttaatctgataactatacttaaccttaggcatattagtaccacgcctcaaaagttcacacaaatcaaataacaatatgggtatttaatgataactt 26425547  T
Q  104 aacaagctttcaaacagtaagaa 126  Q
    |||||||||||| || |||||||    
T  26425548 aacaagctttcagacggtaagaa 26425570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 27157508 - 27157383
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgataa 100  Q
    |||||| ||||| |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||  | |  ||||||||||    
T  27157508 ttcaaatttaatctgataagcatacttaacctttgacatattagtaccaagcctcaaaagttcacacaaatcaaataacaatatgggtatttaatgataa 27157409  T
Q  101 cttaacaagctttcaaacagtaagaa 126  Q
    ||||||||||||||||||| ||||||    
T  27157408 cttaacaagctttcaaacaataagaa 27157383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 3525898 - 3525780
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgatta-ttaatgata 99  Q
    |||||||||||| ||||||||||  |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | || || |||||||||    
T  3525898 ttcaaacttaatctgataaccatgattaaccttagacatattagtatcaagcctcaaaagttcacacaaatcaaataacaat-atgagtatttaatgata 3525800  T
Q  100 acttaacaagctttcaaaca 119  Q
    |||||||||| ||| |||||    
T  3525799 acttaacaagtttttaaaca 3525780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 21523943 - 21524020
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaata 83  Q
    ||||||||||||||||||| ||||||||||||||||     ||||| ||||||||||||||||||||||||||||||||||||    
T  21523943 ttcaaacttaatttgataatcatacttaaccttagg-----tagtatcaagcctcaaaagttcacacaaatcaaataacaata 21524020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9458957 - 9459027
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaat 71  Q
    |||||||||||| | |||||||||||| ||||||||||||| |||| ||||||| ||||||||| ||||||    
T  9458957 ttcaaacttaatctaataaccatacttgaccttaggcatatcagtagcaagccttaaaagttcatacaaat 9459027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4920096 - 4919975
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattatt-aatgata 99  Q
    |||||||||||| |  ||||||||||| || ||| |||||| |||| ||||| | |  ||||||||||||||||||||| || | || | || |||||||    
T  4920096 ttcaaacttaatctactaaccatacttgacattatgcatatcagtagcaagctttagcagttcacacaaatcaaataaccat-aggagtcttaaatgata 4919998  T
Q  100 acttaacaagctttcaaacagta 122  Q
    ||||||||||||| |||||||||    
T  4919997 acttaacaagcttccaaacagta 4919975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 3406317 - 3406257
Alignment:
Q  240 ttactatataaataataattgtgggaaaatgtaatatac-tatatacgggtcggcctgata 299  Q
    ||||||| |||||||||| | |||| ||||||||||||| |||||| ||||||||||||||    
T  3406317 ttactatgtaaataataaatatggggaaatgtaatatacttatatatgggtcggcctgata 3406257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5734167 - 5734097
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaat 71  Q
    |||||||||||| | |||||||||||| |||||| |||||| |||| ||| ||| || | |||||||||||    
T  5734167 ttcaaacttaatctaataaccatacttgaccttaagcatataagtagcaaaccttaacatttcacacaaat 5734097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 15055589 - 15055742
Alignment:
Q  1 ttcaaacttaatttgata--accatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgat 98  Q
    |||||||||||| |||||  |||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||  | |  ||||||||    
T  15055589 ttcaaacttaatctgatataaccatacttaaccttatgcatattagtaccaagcctcaaaagtttgcacaaatcaaataacaatatgggtagttaatgat 15055688  T
Q  99 aacttaacaagctttcaaacagtaagaacatgaagaagaaaaatcagcacttaagc 154  Q
    ||||||||||||||||||||||||||||  |||  ||  |||||||||||||||||    
T  15055689 aacttaacaagctttcaaacagtaagaaactga--aaacaaaatcagcacttaagc 15055742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 16463940 - 16463822
Alignment:
Q  8 ttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattatt-aatgataacttaac 106  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | || |||| ||||||||| ||||    
T  16463940 ttaatatgataatcatacttaaccttaggcatattagtaccaagcctcaaaatttcacacaaatcaaatgacaat-atgagtattaaatgataacataac 16463842  T
Q  107 aagctttcaaacagtaagaa 126  Q
    ||||||||||||| ||||||    
T  16463841 aagctttcaaacaataagaa 16463822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 22300216 - 22300134
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaata 83  Q
    |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  22300216 ttcaaacttaatctgataaccatacttaaccttaggcatatttgaaccaagcctcaaaagttcatacaaatcaaataacaata 22300134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 22293220 - 22293138
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaata 83  Q
    |||||||||||| |||||| ||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  22293220 ttcaaacttaatctgataatcattcttaaccttaggcatattagtctcaagcctcaaaagttcatacaaatcaaataacaata 22293138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6138926 - 6138851
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaat 76  Q
    ||||||||| || ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  6138926 ttcaaacttgatctgataaccatacttaaccttaagcatatgagtaccaagcctcgaaagttcacacaaatcaaat 6138851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4127460 - 4127581
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattatt-aatgata 99  Q
    |||||||||||| |  ||||||||||| ||||||||||||| |||| ||| |||  |  |||||||||||||||| ||| || | || | || |||||||    
T  4127460 ttcaaacttaatctactaaccatacttgaccttaggcatatcagtagcaaaccttgaccgttcacacaaatcaaaaaaccat-aggagtcttaaatgata 4127558  T
Q  100 acttaacaagctttcaaacagta 122  Q
    |||||||||||||||||||||||    
T  4127559 acttaacaagctttcaaacagta 4127581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 22292980 - 22292920
Alignment:
Q  240 ttactatataaataataattgtgggaaaatgtaatatact-atatacgggtcggcctgata 299  Q
    |||||||||||||||||| | ||||||| ||||||||||| |||||| |||||| ||||||    
T  22292980 ttactatataaataataaatatgggaaattgtaatatactcatatacaggtcggtctgata 22292920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 15055836 - 15055896
Alignment:
Q  240 ttactatataaataataattgtgggaaaatgtaatatact-atatacgggtcggcctgata 299  Q
    |||||||||||||||||| ||| |  |||||||||||||| |||||| |||||| ||||||    
T  15055836 ttactatataaataataaatgtcgagaaatgtaatatactcatatacaggtcggtctgata 15055896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 35362152 - 35362335
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgataa 100  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||  | |  ||||||||||    
T  35362152 ttcaaacttaatctgataatcatacttaactttaggcatattagtaccaagcctaaaaaattcacacaaatcaaatcacaatatgggtatttaatgataa 35362251  T
Q  101 cttaacaagctttcaaacagtaagaacatgaagaagaaaaatcagcacttaagcnnnnnnnnnntgcataaaatcttcaatgtgat 186  Q
    || ||||||||||||||| |||||||  |||  ||  |||||||||||||||||          ||||||||||||||||||||||    
T  35362252 ctaaacaagctttcaaaccgtaagaaactga--aaacaaaatcagcacttaagcaggaaaaaaatgcataaaatcttcaatgtgat 35362335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 13641060 - 13641142
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaata 83  Q
    |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  13641060 ttcaaacttaatctgataaccatacttaaccttaggcatatttgaaccaagcctcaaaagttcatacaaatcaaataacaata 13641142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 8770862 - 8770979
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattatt-aatgata 99  Q
    |||||||||||| | |||||||||||| ||||||||||||| |||| ||||| | || ||||||||||||| ||||||| || | || | || |||||||    
T  8770862 ttcaaacttaatctaataaccatacttgaccttaggcatatcagtagcaagcattaacagttcacacaaattaaataactat-atgagtcttaaatgata 8770960  T
Q  100 acttaacaagctttcaaac 118  Q
    ||||||||||||| |||||    
T  8770961 acttaacaagcttacaaac 8770979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 51126888 - 51126958
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaat 71  Q
    |||||||||||| | |||| ||||||| |||||| |||||| |||| ||||| | || |||||||||||||    
T  51126888 ttcaaacttaatctaataatcatacttgaccttatgcatatcagtagcaagctttaacagttcacacaaat 51126958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 29909727 - 29909576
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgatta-ttaatgata 99  Q
    |||||| ||||| |||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| | || || |||||||||    
T  29909727 ttcaaatttaatctgataatcatactcaaccttagacgtattagtaccaagcctcaaaagttcacacaaatcaaataacaat-atgagtatttaatgata 29909629  T
Q  100 acttaacaagctttcaaacagtaagaacatgaagaagaaaaatcagcacttaagc 154  Q
    |||||||||||||| ||||| ||||||  |||  ||  |||||||||||||||||    
T  29909628 acttaacaagcttttaaacaataagaaactga--aaacaaaatcagcacttaagc 29909576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 6628132 - 6628251
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatatt---agtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatga 97  Q
    |||||||||||| ||||||||||||||||| |||| ||||||   ||||||||||||||||||||||| |||||||||||||||||  | |  |||||||    
T  6628132 ttcaaacttaatctgataaccatacttaactttagtcatattattagtaccaagcctcaaaagttcactcaaatcaaataacaatatgggtatttaatga 6628231  T
Q  98 taacttaacaagctttcaaa 117  Q
    ||||||||||| ||||||||    
T  6628232 taacttaacaaactttcaaa 6628251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 6635934 - 6636053
Alignment:
Q  4 aaacttaatttgataaccatacttaaccttaggcatatt---agtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgataa 100  Q
    ||||||||| | |||| ||||||||||||||| ||||||   ||||||||||||||||||||||| |||||||||||||||||  | |  ||||||||||    
T  6635934 aaacttaatcttataatcatacttaaccttagtcatattattagtaccaagcctcaaaagttcactcaaatcaaataacaatatgggtatttaatgataa 6636033  T
Q  101 cttaacaagctttcaaacag 120  Q
    ||||||||||||||||||||    
T  6636034 cttaacaagctttcaaacag 6636053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 5938243 - 5938120
Alignment:
Q  2 tcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaata-acgattattaatgataa 100  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||||| |||  ||||||||||||||||| ||||||||||   || | || |||||||    
T  5938243 tcaaacttaatctgataatcatacgtaaccttaggcatattagtaccatgcc-aaaaagttcacacaaatccaataacaatatgagaat-tttatgataa 5938146  T
Q  101 cttaacaagctttcaaacagtaagaa 126  Q
    ||||||||||||||||||| ||||||    
T  5938145 cttaacaagctttcaaacaataagaa 5938120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 6628341 - 6628394
Alignment:
Q  243 ctatataaataataattgtgggaaaatgtaatatact-atatacgggtcggcct 295  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  6628341 ctatataaataataaatgtgggataatgtaatatactaatatacgggtcggcct 6628394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 6636139 - 6636196
Alignment:
Q  243 ctatataaataataattgtgggaaaatgtaatatact-atatacgggtcggcctgata 299  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||||||    
T  6636139 ctatataaataataaatgtgggataatgtaatatactaatatatgggtcggcctgata 6636196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 29909478 - 29909440
Alignment:
Q  240 ttactatataaataataattgtgggaaaatgtaatatact 279  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  29909478 ttactatataaataataat-gtgggaaaatgtaatatact 29909440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 18421734 - 18421793
Alignment:
Q  93 aatgataacttaacaagctttcaaacagtaagaacatgaagaagaaaaatcagcacttaagc 154  Q
    ||||||||||||||||||||||||| ||||||||  |||  ||  |||||||||||||||||    
T  18421734 aatgataacttaacaagctttcaaagagtaagaaactga--aaacaaaatcagcacttaagc 18421793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 3294698 - 3294742
Alignment:
Q  245 atataaataataattgtgggaaaatgtaatatac-tatatacggg 288  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||||    
T  3294698 atataaataataaatgtggtaaaatgtaatatacttatatacggg 3294742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 16576543 - 16576587
Alignment:
Q  245 atataaataataattgtgggaaaatgtaatatact-atatacggg 288  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||    
T  16576543 atataaataataaatgtggaaaaatgtaatatactcatatacggg 16576587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 54739590 - 54739449
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataacaataacgattattaatgataa 100  Q
    |||||||||||| ||||||||||||||||| |||| ||||| ||||| |||||||||||||| ||||||||||||||||||||  |    ||||||||||    
T  54739590 ttcaaacttaatctgataaccatacttaactttagacatataagtactaagcctcaaaagtttacacaaatcaaataacaatatgggcatttaatgataa 54739491  T
Q  101 cttaacaagctttcaaacagtaagaacatgaagaagaaaaat 142  Q
    ||||||||||||| | || |||||||  ||||||| ||||||    
T  54739490 cttaacaagcttttatacggtaagaaactgaagaaaaaaaat 54739449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 54739340 - 54739280
Alignment:
Q  240 ttactatataaataataattgtgggaaaatgtaatatact-atatacgggtcggcctgata 299  Q
    |||||||||||||||||| |||||| |||||||||||||| ||||| ||||| ||||||||    
T  54739340 ttactatataaataataaatgtggggaaatgtaatatactcatatatgggtctgcctgata 54739280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 5926918 - 5926996
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaatcaaataac 79  Q
    |||||||||||  | ||||||||||||||| |||| |||||||||| ||||||| || |||||||||||||||||||||    
T  5926918 ttcaaacttaaactaataaccatacttaacattagacatattagtagcaagccttaacagttcacacaaatcaaataac 5926996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31223935 - 31224005
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaat 71  Q
    |||||||||||| | |||||||||||| ||||||||||||| | || ||||||| || |||||||||||||    
T  31223935 ttcaaacttaatctaataaccatacttgaccttaggcatatcactagcaagccttaatagttcacacaaat 31224005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31335605 - 31335675
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaaat 71  Q
    ||||| |||||| | |||||||||||  ||||||||||||| |||| ||||| | || |||||||||||||    
T  31335605 ttcaatcttaatctaataaccatactggaccttaggcatatcagtagcaagcattaacagttcacacaaat 31335675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 34583191 - 34583135
Alignment:
Q  244 tatataaataataattgtgggaaaatgtaatatact-atatacgggtcggcctgata 299  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||| | ||||||||||    
T  34583191 tatataaataataaatgtggaaaagtgtaatatactcatatacgagccggcctgata 34583135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40897308 - 40897240
Alignment:
Q  1 ttcaaacttaatttgataaccatacttaaccttaggcatattagtaccaagcctcaaaagttcacacaa 69  Q
    ||||||||||||   |||||||||||| ||||||| |||||  ||| ||||||| || |||||||||||    
T  40897308 ttcaaacttaatcaaataaccatacttgaccttagacatatcggtagcaagccttaacagttcacacaa 40897240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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