View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10476_low_13 (Length: 250)
Name: NF10476_low_13
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 49684348 - 49684106
Alignment:
| Q |
1 |
caagatatgtcacattactaatagagtatacataagtttttggctaacctttggatcctatgacaagtgctgatgaaatcttatcattatctactgaaat |
100 |
Q |
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| T |
49684348 |
caagatatgtcacattactaatagagtatacataagtttttggctaacctttggatcctatgacaagtgctgatgaaatcttatcattatctactgaaat |
49684249 |
T |
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| Q |
101 |
attaaaggttcaatttactagtgtcatattacattcggctcgccgattgaccactgacattagaagcagtcgattcactatacgatttatctgtcatagc |
200 |
Q |
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| T |
49684248 |
attaaaggttcaatttactagtgtcatattacattcggctcgccgattgaccactgacattagaagcagtcgattcactatacgatttatctgtcatagc |
49684149 |
T |
|
| Q |
201 |
tgtaggaggtgttaacttcttattcttcaacaatttcatctca |
243 |
Q |
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| T |
49684148 |
tgtaggaggtgttaacttcttattcttcaacaatttcatctca |
49684106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 49676198 - 49676075
Alignment:
| Q |
120 |
agtgtcatattacattcggctcgccgattgaccactgacattagaagcagtcgattcactatacgatttatctgtcatagctgtaggaggtgttaacttc |
219 |
Q |
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| T |
49676198 |
agtgttatattaaatccggcttgctgactgaccgctgacattagaagtagtcgattcactatcccatttatccgtcacacccgtaggagacgttaacttt |
49676099 |
T |
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| Q |
220 |
ttattcttcaacaatttcatctca |
243 |
Q |
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| T |
49676098 |
ttattcttcaacaatttcatctca |
49676075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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