View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10476_low_16 (Length: 239)
Name: NF10476_low_16
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 49684395 - 49684615
Alignment:
| Q |
1 |
caagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcaaaatttatatattagcatattccttaactatgtttt |
100 |
Q |
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| T |
49684395 |
caagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcgaaatttacatattagcatattccttaactatgtttt |
49684494 |
T |
|
| Q |
101 |
ctccaattgcataattaaagttgttaatattcatatttagccacagcagaattacaactatgtactacattatcaaattttatttcagttcattctctta |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49684495 |
ctctaattgcataattaaagttgttaatattcatatttagccacagcagaattacaactatgtactacattatcaaattttatttcagttcattctcgta |
49684594 |
T |
|
| Q |
201 |
taaatagtcctagtagtaatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
49684595 |
taaatagtcctagtagtaatt |
49684615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 20059500 - 20059584
Alignment:
| Q |
30 |
gaattgaccaattcaaaactggatactgaacttcaaaatttatatattagcata-ttccttaactatgttttctccaattgcata |
113 |
Q |
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|||| |||| |||||| ||||||||||||||||||||||| | || |||||||| ||| | || ||| |||||||||||||||| |
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| T |
20059500 |
gaatggaccgattcaagactggatactgaacttcaaaattaacatgttagcatatttcacttaccatgctttctccaattgcata |
20059584 |
T |
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