View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10476_low_17 (Length: 239)
Name: NF10476_low_17
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31535814 - 31536036
Alignment:
| Q |
1 |
gattctgaatactttcccgcttgctattccccaagtttattcaattttcatgagtctcgttgatcttaatgannnnnnnnnnnncttcttatacatagga |
100 |
Q |
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| T |
31535814 |
gattcagaatactttcccgcttgctattccccaagtttattcaattttcatgagtctcgttgatcttaatgatttttgttttttcttcttatacatagga |
31535913 |
T |
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| Q |
101 |
ccggaggtaatataatattactccctttgaattacaatagaannnnnnnnnnnnagcaagcttgttcttccctcaaaagcatgtcatggccaacataatt |
200 |
Q |
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| T |
31535914 |
ccagaggtaatataata-tactccctttgaattacaatagaattttttatttttagcaagcttgttcttcccttaaaagcatgtcatggccaacataatt |
31536012 |
T |
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| Q |
201 |
cactatatttgtcactaggtgtgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
31536013 |
cactatatttgtcactaggtgtgt |
31536036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 18098774 - 18098835
Alignment:
| Q |
163 |
tgttcttccctcaaaagcatgtcatggccaacataattcactatatttgtcactaggtgtgt |
224 |
Q |
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| T |
18098774 |
tgttcttccctcaaaagcatgtcatagccaacataattcactatatttgtcactaggtgtgt |
18098835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 18098645 - 18098692
Alignment:
| Q |
25 |
tattccccaagtttattcaattttcatgagtctcgttgatcttaatga |
72 |
Q |
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| T |
18098645 |
tattccccaattttattcaattttcaggagtctcgttgatcttaatga |
18098692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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