View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10476_low_18 (Length: 231)
Name: NF10476_low_18
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 47309310 - 47309232
Alignment:
| Q |
11 |
atcatcaaccgatgaaattataagaaacaaggagaataatgagatattatcctcagatttagttcaaacttagttccac |
89 |
Q |
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| T |
47309310 |
atcatcaaccgatgaaattataagaaacaaggagaataatgagatattatcctcagatttagttcaaacttagttccac |
47309232 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 47309184 - 47309103
Alignment:
| Q |
135 |
caacgaaccacctaaattaatccatcctccacattattctcttattggacatac---aatatagagcaacaataacagtaga |
213 |
Q |
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| T |
47309184 |
caacgaaccacctaaattaatccatcctccacattattctcttattggacatacaataatatagagcaacaataacagtaga |
47309103 |
T |
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