View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10476_low_19 (Length: 215)
Name: NF10476_low_19
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3218737 - 3218930
Alignment:
| Q |
1 |
tcgacgaagattagtcactgataaacggtggtagaaacttcataccaatatcatagtaaccagaaagaaagacatgatacatttannnnnnn-cttgtat |
99 |
Q |
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| T |
3218737 |
tcgacgaagattagtcactggtaaacggtggtggaaactt-------atatcatggtaaccggaaagaaagacgggatacatttttttttcttcttgtat |
3218829 |
T |
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| Q |
100 |
ggtgattaacctaatcttttaggggatatcaagattttgataattataagatcaaaatggaatttaattagtaaacaataaataaaatggagggcattta |
199 |
Q |
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| T |
3218830 |
ggtgattaacctaatcttttaggggatatcaagattctgataattataagatcaaaatggaatttaattagtaaacaataaataaaatggagggcattta |
3218929 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 18059572 - 18059514
Alignment:
| Q |
8 |
agattagtcactgataaacggtggtagaaacttcataccaatatcatagtaaccagaaa |
66 |
Q |
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| T |
18059572 |
agattagtcactgataaacggcggtataaacttcatacatataacatggtaaccggaaa |
18059514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 33731641 - 33731701
Alignment:
| Q |
8 |
agattagtcactgataaacggtggtagaaacttcataccaatatcatagtaaccagaaaga |
68 |
Q |
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| T |
33731641 |
agattagtcactcataaacggcggttgaaacttcgtaccaataacatgataaccggaaaga |
33731701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 16574113 - 16574055
Alignment:
| Q |
2 |
cgacgaagattagtcactgataaacggtggtagaaacttcataccaatatcatagtaac |
60 |
Q |
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| T |
16574113 |
cgacgtagattagtcactgataagcagcggtggaaacttcgtaccaatatcattgtaac |
16574055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 55245593 - 55245529
Alignment:
| Q |
2 |
cgacgaagattagtcactgataaacggtggtagaaacttcataccaatatcatagtaaccagaaa |
66 |
Q |
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| T |
55245593 |
cgacggagattagttactactaagcggtggtggaaacttcgtaccaatatcatggtaacccgaaa |
55245529 |
T |
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