View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10476_low_2 (Length: 456)
Name: NF10476_low_2
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 31535230 - 31535675
Alignment:
| Q |
1 |
acggaattcagctagtgttgcccgtcctattcgtagaatatgtcagaggacgtaagcttcttcaaattctggtacagttttaagttcaaaggatgcttct |
100 |
Q |
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| T |
31535230 |
acggaattcagctagtgttgcccatcctattcgtagaatatgtcagaggacgtaagcttcttcaaattctggtacagttttaagttcaaaggatgcttct |
31535329 |
T |
|
| Q |
101 |
ttatctgaggctgttgtgactcatggttcaaggcttggatggaaatggaaatcttcaagtgttcataataatgatctctgaaaattaggcaggacctaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31535330 |
ttatctgaggctgttgtgactcatggttcaaggcttggatggaaatggaaatcttcaagggttcataataatgatctctgaaaattaggcaggacctaga |
31535429 |
T |
|
| Q |
201 |
cctggatcagcagatattgaagcatttaagccaatttctgaacctatgatatccaaaaattaggaaatgatgaattcaactgcaagggtacaccttccag |
300 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
31535430 |
cctggatcagcaaatattgaatcatttaagccaatttctgaacctatgatatccaaaaatgaggaaatgatgaattcaactgcaagggtacactttccag |
31535529 |
T |
|
| Q |
301 |
ttcttttcccagaacaatgacacaagatagtgaagaggccataagatttcaaaaactttaaattctggtggagacactccccctatacagaaggttggtc |
400 |
Q |
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| T |
31535530 |
ttctcttcccagaacaatgatacaagatagt---gaggccataagatttcaaaaactttaaattctggtggagacactccccctatacagaaggttggtc |
31535626 |
T |
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| Q |
401 |
acgttctttagagtttacctgactatggttctttgtttgccacttcttg |
449 |
Q |
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| T |
31535627 |
acgttctttagagtttacctgactatggttctttgtttgccacttcttg |
31535675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 34534347 - 34534210
Alignment:
| Q |
7 |
ttcagctagtgttgcccgtcctattcgtagaatatgtcagaggacgtaagcttcttcaaattctggtacagttttaagttcaaaggatgcttctttatct |
106 |
Q |
| |
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||||||||||||||| |||||| || ||||| ||| || || || | ||||||| |||| | |||||||||||||| || | | ||| ||| |||| |
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| T |
34534347 |
ttcagctagtgttgcgcgtcctgttagtagagtatctcgaagaacatcagcttctccaaaaaccggtacagttttaagctctgatcacgctccttcatct |
34534248 |
T |
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| Q |
107 |
gaggctgttgtgactcatggttcaaggcttggatggaa |
144 |
Q |
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|| ||| |||||||| ||||||||||||||||||||| |
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| T |
34534247 |
gaagctcctgtgactcctggttcaaggcttggatggaa |
34534210 |
T |
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