View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10476_low_3 (Length: 455)

Name: NF10476_low_3
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10476_low_3
NF10476_low_3
[»] chr7 (1 HSPs)
chr7 (19-128)||(42561546-42561655)
[»] chr3 (2 HSPs)
chr3 (21-127)||(49763929-49764039)
chr3 (27-106)||(48352905-48352984)
[»] chr6 (1 HSPs)
chr6 (27-127)||(7578480-7578584)
[»] chr8 (1 HSPs)
chr8 (71-162)||(18604082-18604173)
[»] chr1 (1 HSPs)
chr1 (43-114)||(45820410-45820481)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 42561546 - 42561655
Alignment:
Q  19 tatatggctgtttgtggcctaacattattgtaacagtttcttggcagctcccttaagcattgcttgtgcttgaggagttgtatgttgtttttatttttct 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||    
T  42561546 tatatggttgtttgtggcctaacattattgtaacagtttcttggcagctcccttaaacactacttgtgcttgaggagttgtatgttgtttttatttttct 42561645  T
Q  119 tagcttcttc 128  Q
    ||||||||||    
T  42561646 tagcttcttc 42561655  T

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Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 49764039 - 49763929
Alignment:
Q  21 tatggctgtttgtggcctaacattattgtaacagtttcttggcagctcccttaagcattgcttgtgcttgaggagttgtatgttgtttt----tattttt 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||    |||||||    
T  49764039 tatggctgtttgtggcttaacattattgtaacagtttcttggcagctcccttaagcactacttgtgcttgaggaattgtctgttgttttaatatattttt 49763940  T
Q  117 cttagcttctt 127  Q
    |||||||||||    
T  49763939 cttagcttctt 49763929  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 48352905 - 48352984
Alignment:
Q  27 tgtttgtggcctaacattattgtaacagtttcttggcagctcccttaagcattgcttgtgcttgaggagttgtatgttgt 106  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| || | ||| ||||||||||||||||||||||    
T  48352905 tgtttgtggcttaacattattgtaagagtttcttggcagctcccttaaacactacttatgcttgaggagttgtatgttgt 48352984  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 7578584 - 7578480
Alignment:
Q  27 tgtttgtggcctaacattattgtaacagtttcttggcagctcccttaagcattgcttgtgcttgaggagttgtatgttgtttt----tatttttcttagc 122  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||| || | |||||| || ||||||||| |||||||||    |||||||||||||    
T  7578584 tgtttgtggcttaacattattgcaacagtttcttggcagctctcttaaacactacttgtgtttaaggagttgtttgttgttttaatatatttttcttagc 7578485  T
Q  123 ttctt 127  Q
    |||||    
T  7578484 ttctt 7578480  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 18604173 - 18604082
Alignment:
Q  71 ttaagcattgcttgtgcttgaggagttgtatgttgtttttatttttcttagcttcttcnnnnnnncaaactaccatatgaattattttgcac 162  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||       |||||||| ||||||||||||||||||    
T  18604173 ttaagcactacttgtacttgaggagttgtatgttgtttttatttttcttcgcttcttcaaaaaaacaaactactatatgaattattttgcac 18604082  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 45820410 - 45820481
Alignment:
Q  43 ttattgtaacagtttcttggcagctcccttaagcattgcttgtgcttgaggagttgtatgttgtttttattt 114  Q
    |||||||||||||| ||| ||||||| || |||||   ||| ||||||||||||||| ||||||||| ||||    
T  45820410 ttattgtaacagttactttgcagctcactcaagcaccccttatgcttgaggagttgtttgttgttttaattt 45820481  T

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