View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10476_low_4 (Length: 448)

Name: NF10476_low_4
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10476_low_4
NF10476_low_4
[»] chr8 (9 HSPs)
chr8 (73-441)||(3591322-3591690)
chr8 (145-441)||(3577053-3577350)
chr8 (73-410)||(3569257-3569593)
chr8 (15-78)||(3591040-3591103)
chr8 (305-388)||(3602227-3602310)
chr8 (305-388)||(14341110-14341193)
chr8 (15-69)||(3568978-3569032)
chr8 (27-69)||(3601994-3602036)
chr8 (27-69)||(14340874-14340916)
[»] chr6 (4 HSPs)
chr6 (146-217)||(1409738-1409809)
chr6 (339-396)||(1409847-1409904)
chr6 (15-70)||(1409385-1409440)
chr6 (23-66)||(1412439-1412482)


Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 73 - 441
Target Start/End: Original strand, 3591322 - 3591690
Alignment:
Q  73 gtttgcatctcaatctttggtattgccgataatcgcactcaactgttcttgatgtagcctcaaccatgttcccgttgtggtcacaaagacatcaaaaaca 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  3591322 gtttgcatctcaatctttggtattgccgataatcgcactcaactgttcttgatgtagcctcaaccgtgttcgcgttgtggtcacaaagacatcaaaaaca 3591421  T
Q  173 ttgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttttgctatctttaaattagctagtgcttattgaatatcacaatcattt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3591422 ttgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttttgctatctttaaattagctagtgcttattgaatatcacaatcattt 3591521  T
Q  273 tttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaata 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3591522 tttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaata 3591621  T
Q  373 tttctgtggaaattactatggttatacataaattgcttcatcttcatcatcatttcactcttcatctca 441  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3591622 tttctgtggaaattactatggttacacataaattgcttcatcttcatcatcatttcactcttcatctca 3591690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 145 - 441
Target Start/End: Original strand, 3577053 - 3577350
Alignment:
Q  145 cgttgtggtcacaaagacatcaaaaacattgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttttgctatctttaaattagc 244  Q
    |||||||||||||||||| |||||||| |||||||| || |||||||||||||  |||| ||||||||||| |||||||||||| |||||| || |||||    
T  3577053 cgttgtggtcacaaagacctcaaaaactttgttttcgcaactcgtatcacaatcactaaactttttcttaatccttggtttttgttatcttcaacttagc 3577152  T
Q  245 tagtgcttattgaatatcacaatcattttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttg 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3577153 tagtgcttattgaatatcacaatcattttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttg 3577252  T
Q  345 tggcaggttttgtgaatccattgaaatatttctgtggaaattactatggtta-tacataaattgcttcatcttcatcatcatttcactcttcatctca 441  Q
    |||| |||||||| ||||||||||||| || |||||||| ||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  3577253 tggctggttttgtaaatccattgaaattttgctgtggaagttactatggttaccacataaattgcttcatcttcatcatcgtttcactcttcatctca 3577350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 73 - 410
Target Start/End: Original strand, 3569257 - 3569593
Alignment:
Q  73 gtttgcatctcaatctttggtattgccgataatcgcactcaactgttcttgatgtagcctcaaccatgttcccgttgtggtcacaaagacatcaaaaaca 172  Q
    |||||||||| |||||||| ||||||||| |||||||| ||||||| |||||||| ||||||||  ||||| |||||||||||||||||||| ||||| |    
T  3569257 gtttgcatctgaatctttgttattgccgaaaatcgcacacaactgtgcttgatgtggcctcaacggtgttcgcgttgtggtcacaaagacataaaaaaaa 3569356  T
Q  173 --ttgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttt--tgctatctttaaattagctagtgcttattgaatatcacaatc 268  Q
      || ||||| |||||||||||||||| ||||||||||||||||||||||||||||  |   |||||||||||||||||||||||||||||      |||    
T  3569357 cttttttttcgcagctcgtatcacaatcgctaacctttttcttaaaccttggttttgttataatctttaaattagctagtgcttattgaat------atc 3569450  T
Q  269 attttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattga 368  Q
    | ||||||||||| |||| |||| ||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||| |||| ||||||||||||||     
T  3569451 aatttttgtataattcgtaacaagcggacctagccagtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggtcttgtgaatccattgg 3569550  T
Q  369 aatatttctgtggaaattactatggtta-tacataaattgctt 410  Q
    ||| || |||||||| ||||||||||||  |||||||||||||    
T  3569551 aattttgctgtggaagttactatggttaccacataaattgctt 3569593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 3591040 - 3591103
Alignment:
Q  15 attatccacacaagaagggtaacttagatgccaatggctgtgttaaacctcacaataagtttgc 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3591040 attatccacacaagaagggtaacttagatgccaatggctgtgttaaacctcacaataagcttgc 3591103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 3602227 - 3602310
Alignment:
Q  305 gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac 388  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||||||||||||| ||| ||  ||||||| ||||    
T  3602227 gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttgtgaatccattggaattttgttgtggaagttac 3602310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 14341110 - 14341193
Alignment:
Q  305 gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac 388  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||| ||||||||||| ||| ||  ||||||| ||||    
T  14341110 gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttatgaatccattggaattttgttgtggaagttac 14341193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 3568978 - 3569032
Alignment:
Q  15 attatccacacaagaagggtaacttagatgccaatggctgtgttaaacctcacaa 69  Q
    ||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||    
T  3568978 attatccacacaagaaggggaacttggatgccaatggttgttttaaacctcacaa 3569032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 3601994 - 3602036
Alignment:
Q  27 agaagggtaacttagatgccaatggctgtgttaaacctcacaa 69  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  3601994 agaagggtaacttggatgccaatggctgtgttaaacctcacaa 3602036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 14340874 - 14340916
Alignment:
Q  27 agaagggtaacttagatgccaatggctgtgttaaacctcacaa 69  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  14340874 agaagagtaacttggatgccaatggctgtgttaaacctcacaa 14340916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 1409738 - 1409809
Alignment:
Q  146 gttgtggtcacaaagacatcaaaaacattgttttcacagctcgtatcacaattgctaacctttttcttaaac 217  Q
    ||||||||||||||| |||||||||| |||||||  |||||||||| ||||| |||||||||||||||||||    
T  1409738 gttgtggtcacaaaggcatcaaaaactttgtttttgcagctcgtataacaatcgctaacctttttcttaaac 1409809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 1409847 - 1409904
Alignment:
Q  339 gatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattactatggtta 396  Q
    ||||||||||||||||||||||||||||| ||| || |||||||| ||||||||||||    
T  1409847 gatttgtggcaggttttgtgaatccattggaattttgctgtggaagttactatggtta 1409904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 1409385 - 1409440
Alignment:
Q  15 attatccacacaagaagggtaacttagatgccaatggctgtgttaaacctcacaat 70  Q
    ||||||||||||||||||||||||| |||| | |||||||||||| ||||||||||    
T  1409385 attatccacacaagaagggtaacttggatgtctatggctgtgttatacctcacaat 1409440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 1412439 - 1412482
Alignment:
Q  23 cacaagaagggtaacttagatgccaatggctgtgttaaacctca 66  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||    
T  1412439 cacaagaagggtaacctagacgccaatggctgtgtgaaacctca 1412482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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