View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10476_low_6 (Length: 408)
Name: NF10476_low_6
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 21 - 403
Target Start/End: Original strand, 3302755 - 3303137
Alignment:
| Q |
21 |
tatgctatctaaaccaaatgccaaatagggacctcccacaaagcaaaccaaagcatatcaagaattctgatttactttcaatgtagcagcttccaccgat |
120 |
Q |
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| T |
3302755 |
tatgctatctaaaccaaatgccaaatagggacctcccacaaagcaaaccaaagcatatcaagaactctgatttactttcaatgtagcagcttccactgat |
3302854 |
T |
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| Q |
121 |
caaaatcttattacatcaatcccctaaagagtgaccgctatttatatacgctatcatgaaaggagaggctttgtagaaattgttcggttgattcaacata |
220 |
Q |
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| T |
3302855 |
caaaatcttattacatcaatcccctaaagagtgaccgctatttatatacgctatcatgaaaggagaggctttgtagaaattgttcggttgattcaacata |
3302954 |
T |
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| Q |
221 |
atattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggagttaaaattattggta |
320 |
Q |
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| T |
3302955 |
atattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggagttaaaattattggta |
3303054 |
T |
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| Q |
321 |
acaagcaaattcggccctcccctgctgtcaccaattgctgccatcacctaggcctgctggcttctcctcctttctctgctgct |
403 |
Q |
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| T |
3303055 |
acaagcaaattcggccctcccctgctgtcaccaattgctgccatcacctaggcctgctggcttctcctcctttttctgttgct |
3303137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 329
Target Start/End: Original strand, 3291074 - 3291197
Alignment:
| Q |
206 |
ggttgattcaacataatattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggag |
305 |
Q |
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||||||||| |||| ||||||||| ||||||||||||||| | ||||| ||||||||| ||||||||||||| ||||| ||||| | |||| |||| |
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| T |
3291074 |
ggttgattccacattatattcagaattttgcacaaagcaaagccgaacgctgggctttggttaccatctcatttgcctgagttgtgtgaggcggttggag |
3291173 |
T |
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| Q |
306 |
ttaaaattattggtaacaagcaaa |
329 |
Q |
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| T |
3291174 |
ttgaaattattggtgacaagcaaa |
3291197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 3290897 - 3290958
Alignment:
| Q |
28 |
tctaaaccaaatgccaaatagggacctcccacaaagcaaaccaaagcatatcaagaattctg |
89 |
Q |
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|||||||| |||||||||| ||||||| || |||| |||||||||||||||||||| |||| |
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| T |
3290897 |
tctaaaccgaatgccaaatggggaccttccccaaaagaaaccaaagcatatcaagaaatctg |
3290958 |
T |
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