View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10476_low_7 (Length: 401)
Name: NF10476_low_7
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 127 - 388
Target Start/End: Complemental strand, 17605921 - 17605660
Alignment:
| Q |
127 |
ctcttatgagactgtgaattaagataaatttatctagaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtag |
226 |
Q |
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| T |
17605921 |
ctcttatgagactgtgaattaagataaatttatctagaatggagcacccttaatgaagcatgatcaaactattgataatctatcctcttaggacttgtag |
17605822 |
T |
|
| Q |
227 |
tagaaggaaaaaggcttgaagaaagtggagacggaggatcgggaactaaatgtgaataaaaagggtattcaggtgatgaaggtgaagaaaaaaggcttgg |
326 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17605821 |
tagaaggaaaaaggcttgaagaaagtggagacgggggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttgg |
17605722 |
T |
|
| Q |
327 |
tgatagcaaaggcttataaggtgattggggggatatgaaaatcatgttactcttcggtgatg |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17605721 |
tgatagcaaaggcttataaggtgattggggggatatgaaattcatgttactcttcggtgatg |
17605660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 132 - 375
Target Start/End: Complemental strand, 17632504 - 17632262
Alignment:
| Q |
132 |
atgagactgtgaattaagataaatttatctagaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaa |
231 |
Q |
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|||||| ||||||| ||||||||||| | ||||| ||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||||||| |
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| T |
17632504 |
atgagagtgtgaat-aagataaattttgcaagaatggagcacccttaatgaagcatgaccaggctattgataatctagcctcttaggacttgtagtagaa |
17632406 |
T |
|
| Q |
232 |
ggaaaaaggcttgaagaaagtggagacggaggatcgggaactaaatgtgaataaaaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgata |
331 |
Q |
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| T |
17632405 |
ggaaaaaggcttgaagaaagtggagacggggggtcaggaactaaatgtgaatataaagggtattcaggtgatggaggcgaagaaaaaaggcttggtgata |
17632306 |
T |
|
| Q |
332 |
gcaaaggcttataaggtgattggggggatatgaaaatcatgtta |
375 |
Q |
| |
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| | | || |||||||||| |||||||||| |||| |||||||| |
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| T |
17632305 |
gtagatgcctataaggtgactggggggataggaaattcatgtta |
17632262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 135 - 374
Target Start/End: Original strand, 16475324 - 16475563
Alignment:
| Q |
135 |
agactgtgaattaagataaatttatctagaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaagga |
234 |
Q |
| |
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|||||||||||||| |||||| | |||||| ||||||||||| |||||||||| |||||||||||||||||| ||||| || ||||||||||||| || |
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| T |
16475324 |
agactgtgaattaatataaatctggatagaatggagcacccttaatgaagcatgaccaaactattgataatctagcctctcagaacttgtagtagaatga |
16475423 |
T |
|
| Q |
235 |
aaaaggcttgaagaaagtggagacggaggatcgggaactaaatgtgaataaaaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagca |
334 |
Q |
| |
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||||||||||||||| ||||||| |||||||| |||||||||||||| | |||||||||||||| ||||| ||||||||||| |||||||||||||| | |
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| T |
16475424 |
aaaaggcttgaagaaggtggagatggaggatccggaactaaatgtgataataaagggtattcaggcgatgatggtgaagaaaataggcttggtgatagta |
16475523 |
T |
|
| Q |
335 |
aaggcttataaggtgattggggggatatgaaaatcatgtt |
374 |
Q |
| |
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|||| |||||||||| |||||||||| |||| ||||||| |
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| T |
16475524 |
gaggcctataaggtgactggggggataggaaattcatgtt |
16475563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 135 - 374
Target Start/End: Original strand, 16480182 - 16480421
Alignment:
| Q |
135 |
agactgtgaattaagataaatttatctagaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaagga |
234 |
Q |
| |
|
|||||||||||||| |||||| | |||||| ||||||||||| |||||||||| |||||||||||||||||| ||||| || ||||||||||||| || |
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| T |
16480182 |
agactgtgaattaatataaatctggatagaatggagcacccttaatgaagcatgaccaaactattgataatctagcctctcagaacttgtagtagaatga |
16480281 |
T |
|
| Q |
235 |
aaaaggcttgaagaaagtggagacggaggatcgggaactaaatgtgaataaaaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagca |
334 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||||||||||||| | |||||||||||||| ||||| ||||||||||| |||||||||||||| | |
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| T |
16480282 |
aaaaggcttgaagaaggtggagatggaggatccggaactaaatgtgataataaagggtattcaggcgatgatggtgaagaaaataggcttggtgatagta |
16480381 |
T |
|
| Q |
335 |
aaggcttataaggtgattggggggatatgaaaatcatgtt |
374 |
Q |
| |
|
|||| |||||||||| |||||||||| |||| ||||||| |
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| T |
16480382 |
gaggcctataaggtgactggggggataggaaattcatgtt |
16480421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 139 - 362
Target Start/End: Complemental strand, 17646038 - 17645815
Alignment:
| Q |
139 |
tgtgaattaagataaatttatctagaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaa |
238 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||| ||||||||||||||||| | |||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
17646038 |
tgtgaattaagataaacttgactagaatggagcagccttagtgaagcatgataaggctattgataatcaggcctcttgggacttgtagtataaggaaaaa |
17645939 |
T |
|
| Q |
239 |
ggcttgaagaaagtggagacggaggatcgggaactaaatgtgaataaaaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaagg |
338 |
Q |
| |
|
|| ||||||||| ||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |
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| T |
17645938 |
ggtttgaagaaattggagacggaggatcaggtattaaatgtgaatagaaagggtattcaggtgatgaaggtgatgaaaaaaggcttggtgacagtaaagg |
17645839 |
T |
|
| Q |
339 |
cttataaggtgattggggggatat |
362 |
Q |
| |
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||| ||||||||| |||||||| |
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| T |
17645838 |
tctatgaggtgattgaggggatat |
17645815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17606061 - 17606011
Alignment:
| Q |
1 |
aatacaacaataaaagaagacaaattttatttatattacaaaagagtatcc |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17606061 |
aatacaacaataaaagaagacaaattttatttatattacaaaagagtatcc |
17606011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 17675889 - 17676023
Alignment:
| Q |
133 |
tgagactgtgaattaagataaatttatctagaatagagcacccttagtgaagcatgatcaaa-ctattgataatctatcctcttaggacttgtagtagaa |
231 |
Q |
| |
|
||||||| |||||||||||||| || | ||||||||||||| | |||||||||| || |||||||||| || |||||||||||||||| |||| |
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|
| T |
17675889 |
tgagactatgaattaagataaaattggttggaatagagcaccccaaatgaagcatgaggaagtctattgataacctgacctcttaggacttgtaaaagaa |
17675988 |
T |
|
| Q |
232 |
ggaaaaaggcttgaagaaagtggagacggaggatc |
266 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||| |
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|
| T |
17675989 |
ggaaatatgcttgaagaaagtggagacggaggatc |
17676023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 269
Target Start/End: Original strand, 20750939 - 20751073
Alignment:
| Q |
135 |
agactgtgaattaagataaatttatctagaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaagga |
234 |
Q |
| |
|
||||| ||||||||||||||||| || ||| ||||||||| | |||||||||| | |||||||| |||| ||| |||| | ||||| ||||||| |
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|
| T |
20750939 |
agactatgaattaagataaatttgaataaaatggagcaccctcaatgaagcatgagaagtctattgattatctggcctattagaatttgtaaaagaagga |
20751038 |
T |
|
| Q |
235 |
aaaaggcttgaagaaagtggagacggaggatcggg |
269 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |
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| T |
20751039 |
aaaatacttgaagaaagtggagatggaggatcggg |
20751073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 17663658 - 17663729
Alignment:
| Q |
195 |
ctattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggaggatc |
266 |
Q |
| |
|
||||||| || || ||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||| |
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|
| T |
17663658 |
ctattgaaaacctgtcctcttagtacttgtaaaagaaggaaaaatgcctgaagaaagtggagacggaggatc |
17663729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 17650455 - 17650321
Alignment:
| Q |
133 |
tgagactgtgaattaagataaatttatctagaatagagcacccttagtgaagcatgatcaaa-ctattgataatctatcctcttaggacttgtagtagaa |
231 |
Q |
| |
|
||||||| |||||||||||||| || | |||| ||||||||| | |||||||||| || ||||||| || || |||||||||||||||| |||| |
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| T |
17650455 |
tgagactctgaattaagataaaattggttggaatggagcaccctcaatgaagcatgaagaagtctattgaaaacctgacctcttaggacttgtaaaagaa |
17650356 |
T |
|
| Q |
232 |
ggaaaaaggcttgaagaaagtggagacggaggatc |
266 |
Q |
| |
|
||||| | | |||||||||||||||||||||||| |
|
|
| T |
17650355 |
ggaaatatacctgaagaaagtggagacggaggatc |
17650321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 377
Target Start/End: Original strand, 20751101 - 20751196
Alignment:
| Q |
282 |
ataaaaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaat-catgttact |
377 |
Q |
| |
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||| ||||||||||||||||||||| | |||| |||||||| |||||||| ||| |||||||||| || ||||||| |||||| ||||||||| |
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|
| T |
20751101 |
atagaaagggtattcaggtgatgaaagcaaagagaaaaggctcggtgatagttgagggctataaggtgactgaggggata-gaaaatccatgttact |
20751196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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