View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10476_low_9 (Length: 398)
Name: NF10476_low_9
Description: NF10476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10476_low_9 |
 | |
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| [»] scaffold0271 (1 HSPs) |
| | |
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| [»] scaffold0640 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 41200239 - 41199881
Alignment:
| Q |
22 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
41200239 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaataagtaggtccttccacttccaaattctaacttaggcttc |
41200140 |
T |
|
| Q |
122 |
ttcaactaaatannnnnnncctgcaaattgcatctagtttcaagacaactaaatgtccatattgctgaaaactataaattctgtcaaccttcctaccttt |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
41200139 |
ttcaactaaatatttttttcctgcaaattgcatctagtttcaagacaactaaatgtccatattgctgaaaactataaattttgtcaaccttcctaccttt |
41200040 |
T |
|
| Q |
222 |
tgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaa |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41200039 |
tgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatcgtgtgatatgcatttattacgcaaaacatatgagaaatctaactgacattcaa |
41199940 |
T |
|
| Q |
322 |
aaacagattagtagtatcctcctgttccaacttacacattgtgaagactcctaaaacaa |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41199939 |
aaacagattagtagtatcctcctgttccaacttacacattgtgaagactcctaaaacaa |
41199881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 1041918 - 1041569
Alignment:
| Q |
22 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |
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| T |
1041918 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaagtaggttcatccacttccaatta--aa---------- |
1041831 |
T |
|
| Q |
122 |
ttcaactaaatannnnnnncctgcaaattgcatctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctac |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
1041830 |
-tcaactaaatatttttttcctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctac |
1041732 |
T |
|
| Q |
218 |
cttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
1041731 |
cttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacat |
1041632 |
T |
|
| Q |
318 |
tcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactcctaaaacaa |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1041631 |
tcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactgctaaaacaa |
1041569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 41192983 - 41192634
Alignment:
| Q |
22 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |
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|
| T |
41192983 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaagtaggttcatccacttccaatta--aa---------- |
41192896 |
T |
|
| Q |
122 |
ttcaactaaatannnnnnncctgcaaattgcatctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctac |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
41192895 |
-tcaactaaatatttttttcctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctac |
41192797 |
T |
|
| Q |
218 |
cttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41192796 |
cttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacat |
41192697 |
T |
|
| Q |
318 |
tcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactcctaaaacaa |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41192696 |
tcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactgctaaaacaa |
41192634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 41407672 - 41407385
Alignment:
| Q |
22 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttc |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
41407672 |
ggtatcaaccaactaaatcatgctagcttacattatcctaaaatggatgtcctttgaaaacatgtaggtccatccacttccaaattcagactttggcttc |
41407573 |
T |
|
| Q |
122 |
ttcaactaaatannnnnnncctgcaaattgcatctagtttcaagacaactaaa-tgtccatattgctgaaaactataaattctgtcaaccttcctacctt |
220 |
Q |
| |
|
||||||| || ||||||||||||||||||||| |||||||||||| |||||||||| | || ||||| ||||||||| ||| ||| || |
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|
| T |
41407572 |
ttcaact--atttttttttcctgcaaattgcatctagttttaagacaactaaattgtccatattaccga----gataaaatctgtcaactttcatacttt |
41407479 |
T |
|
| Q |
221 |
ttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| || |||||||||||| ||||||||||||||||| |
|
|
| T |
41407478 |
ttgttttgcagcaaggcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactaatgagaaatctaactga |
41407385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 33323509 - 33323160
Alignment:
| Q |
22 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |
|
|
| T |
33323509 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaagtaggttcatccacttccaatta--aa---------- |
33323422 |
T |
|
| Q |
122 |
ttcaactaaatannnnnnncctgcaaattgcatctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctac |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
33323421 |
-tcaactaaatatttttttcctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctac |
33323323 |
T |
|
| Q |
218 |
cttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33323322 |
cttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacat |
33323223 |
T |
|
| Q |
318 |
tcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactcctaaaacaa |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33323222 |
tcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactgctaaaacaa |
33323160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 23826 - 24113
Alignment:
| Q |
22 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttc |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
23826 |
ggtatcaaccaactaaatcatgctagcttacattatcctaaaatggatgtcctttgaaaacatgtaggtccatccacttccaaattcagactttggcttc |
23925 |
T |
|
| Q |
122 |
ttcaactaaatannnnnnncctgcaaattgcatctagtttcaagacaactaaa-tgtccatattgctgaaaactataaattctgtcaaccttcctacctt |
220 |
Q |
| |
|
||||||| || ||||||||||||||||||||| |||||||||||| |||||||||| | || ||||| ||||||||| ||| ||| || |
|
|
| T |
23926 |
ttcaact--atttttttttcctgcaaattgcatctagttttaagacaactaaattgtccatattaccga----gataaaatctgtcaactttcatacttt |
24019 |
T |
|
| Q |
221 |
ttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| || |||||||||||| |||||||||||||||||| |
|
|
| T |
24020 |
ttgttttgcagcaaggcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
24113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 3270 - 3549
Alignment:
| Q |
22 |
ggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttc |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |||| |||||| |
|
|
| T |
3270 |
ggtatcaaccaactaaatcatgctagcttacattatcctaaaatggatgtcctttgaaaacatgtaggtccat----------attcagactttggcttc |
3359 |
T |
|
| Q |
122 |
ttcaactaaatannnnnnncctgcaaattgcatctagtttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctacctt |
220 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||| | || | |||| ||||||||| ||| ||| || |
|
|
| T |
3360 |
ttcaactaattttttttttcctgcaaattgcatctagttttaagacaactaaattgtccatattaccgaga----taaaatctgtcaactttcatacttt |
3455 |
T |
|
| Q |
221 |
ttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| || |||||||||||| |||||||||||||||||| |
|
|
| T |
3456 |
ttgttttgcagcaaggcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
3549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 372
Target Start/End: Original strand, 16700352 - 16700496
Alignment:
| Q |
223 |
gttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaa |
322 |
Q |
| |
|
||||||||||||| || |||||| | |||||||||||||| | | || ||||||||||||| ||||||| |||||||| ||||||||| |||| || |
|
|
| T |
16700352 |
gttttgcagcaagtcaaacccaaaaaatgataagaaagaataa----tatggtatgcatttattatgcaaaactgatgagaagtctaactgatattcgaa |
16700447 |
T |
|
| Q |
323 |
aacagattagtagtatcctcctgttccaacttacacattgtgaagactcc |
372 |
Q |
| |
|
|||| || ||| | ||||| ||||| ||||| ||||||||| |||||||| |
|
|
| T |
16700448 |
aacatatcagtcgcatcctgctgtttcaactgacacattgt-aagactcc |
16700496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 12001938 - 12001799
Alignment:
| Q |
144 |
gcaaattgcatctagtttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcc |
242 |
Q |
| |
|
||||||||||||||||||| || || | | || || |||||||||| |||| ||||| |||||||| | | || ||||| |||||||||||||||| | |
|
|
| T |
12001938 |
gcaaattgcatctagtttctagtcagccagattgttcatattgctggaaaccataaaatctgtcaaaccttcttcctttcagtttgcagcaaggcagttc |
12001839 |
T |
|
| Q |
243 |
caaatactgataagaaagaatgaatggtgtgatatgcattt |
283 |
Q |
| |
|
|||| |||||| | |||||| ||| | ||||||||||||| |
|
|
| T |
12001838 |
caaaaactgat-acaaagaaataatagagtgatatgcattt |
12001799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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