View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10477_low_1 (Length: 467)
Name: NF10477_low_1
Description: NF10477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10477_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 450
Target Start/End: Original strand, 40420438 - 40420877
Alignment:
| Q |
9 |
tgagatgaaggagatggatgtgaatcaaattattaagcaggaaaaatagttatactgcagaatnnnnnnnnntgttatgagtattaatcagagaaattta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| | ||||||||| |
|
|
| T |
40420438 |
tgagatgaaggagatggatgtgaatcaaattattaagcgggaaaaatagttataccgcagaataaaaaaa--tgttatgagtattactataagaaattta |
40420535 |
T |
|
| Q |
109 |
aagatggtcaactgttaactaggaaaataatggtacagaaggctacgactattttgatttgactgccacgcaaaaggctagggataaagccaagctgtat |
208 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
40420536 |
aagatagtcaactgttaactaggcaaataatggtacagaaggctacgactattttgatttgactgccacggcaaaggctagggataaagccaaattgtat |
40420635 |
T |
|
| Q |
209 |
atagaagtgaaatcgacgaaatcgacttcggtaaagaatagaaattggtttattctttctagaaagcagtttaaacttgctcaagaaattctggacaact |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
40420636 |
atagaagtgaaatcgacgaaatcgacttcagtaaagaatagaaattggtttattctttctaggaagtggtttaaacttgctcaagaaattatggagaact |
40420735 |
T |
|
| Q |
309 |
acatgatcgcccatgttcttgtagatttggatgagaaagacnnnnnnnnnnnntctatgttgacagaatacttcaattatgatgtaagtgaaaaagagct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40420736 |
acatgatcgcccatgttcttgtagatttagatgagaaagacaaaaataaaaaatctatgttgatagaatacttcaataatgatgtaagtgaaaaagagct |
40420835 |
T |
|
| Q |
409 |
agatatgtgcataattagtaaaaatgtttgtgagtcaggaat |
450 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40420836 |
agatctgtgcataattagtaaaaatgtttgtgagtcaggaat |
40420877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University