View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10477_low_3 (Length: 247)

Name: NF10477_low_3
Description: NF10477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10477_low_3
NF10477_low_3
[»] chr5 (3 HSPs)
chr5 (13-241)||(34646386-34646614)
chr5 (13-241)||(34666080-34666308)
chr5 (21-226)||(19648952-19649151)
[»] chr4 (2 HSPs)
chr4 (17-241)||(45645589-45645810)
chr4 (41-75)||(1390499-1390533)
[»] chr8 (5 HSPs)
chr8 (18-218)||(14183338-14183535)
chr8 (17-230)||(40718094-40718304)
chr8 (25-137)||(14192295-14192404)
chr8 (31-80)||(14201301-14201350)
chr8 (169-225)||(14192436-14192492)
[»] chr6 (1 HSPs)
chr6 (20-239)||(34303063-34303279)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 34646386 - 34646614
Alignment:
Q  13 gacccagttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaaca 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34646386 gaccccgttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaaca 34646485  T
Q  113 tcataattgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttga 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34646486 tcataattgattcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttga 34646585  T
Q  213 tgatcctaatcaacaattcagcctatgct 241  Q
    |||||||||||||||||||||||||||||    
T  34646586 tgatcctaatcaacaattcagcctatgct 34646614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 34666080 - 34666308
Alignment:
Q  13 gacccagttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaaca 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34666080 gaccccgttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaaca 34666179  T
Q  113 tcataattgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttga 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34666180 tcataattgattcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttga 34666279  T
Q  213 tgatcctaatcaacaattcagcctatgct 241  Q
    |||||||||||||||||||||||||||||    
T  34666280 tgatcctaatcaacaattcagcctatgct 34666308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 19649151 - 19648952
Alignment:
Q  21 tttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataatt 120  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||| ||||||||| ||  | ||    || ||    ||| || |||||||||||| ||    
T  19649151 tttctactatttgacgttagaagcatttagtgttggaaacaaaagaatagaatttgaag--tgtt----agatgacagtgaggagggtaacatcatactt 19649058  T
Q  121 gattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatccta 220  Q
    ||||| |||||||||||||| ||| |||| ||  | || |||||||| |||||||| || || |   |  ||||||||||||||||||||||||||||||    
T  19649057 gattctggtacaacattgactcttttaccgtctcatgtttatactaatttggaatcggcggtagcacaactggtgaaactagatcgtgttgatgatccta 19648958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 45645589 - 45645810
Alignment:
Q  17 cagttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcat 116  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||   ||||||||||| ||    
T  45645589 cagtttactacgttttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgat---gaaggtaacattat 45645685  T
Q  117 aattgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgat 216  Q
    |||||||||||||||||||||||   || ||||| | ||||| ||||  || ||||||||||||||||| ||||||||||||||| | ||||| ||||||    
T  45645686 aattgattcaggtacaacattgatggttttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaaacgtgtggatgat 45645785  T
Q  217 cctaatcaacaattcagcctatgct 241  Q
    ||| || ||| |||| |||||||||    
T  45645786 ccttataaactattcggcctatgct 45645810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 1390499 - 1390533
Alignment:
Q  41 aagcatttagtgttggaaacaaaagagtagaattt 75  Q
    |||||||||||||||||||||||||||||||||||    
T  1390499 aagcatttagtgttggaaacaaaagagtagaattt 1390533  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 14183338 - 14183535
Alignment:
Q  18 agttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcata 117  Q
    ||||||||||| |||||||||  |||||||||||||||| ||||||||| ||||||||| ||| |||||   |  ||||| | |||||||||||||||||    
T  14183338 agttttctactatttgacattggaagcatttagtgttggtaacaaaagaatagaatttgaagggtcttc---aaatggtggtcatgaaggtaacatcata 14183434  T
Q  118 attgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatc 217  Q
    ||||||||||||||||| |||||  |||| ||| | || || |||| ||| ||||||||||| ||| |||| |||||||||||  | |||||| ||||||    
T  14183435 attgattcaggtacaacgttgacggttattccaactgatgtttataataatttggaatcagcggtgttggaattggtgaaactgaagcgtgttaatgatc 14183534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 40718094 - 40718304
Alignment:
Q  17 cagttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcat 116  Q
    |||||||||||| |||||||||  |||||||||||||||||||||||||| ||||||||||  | |||||   |  ||||  |||||| |||||||||||    
T  40718094 cagttttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttc---aaatggtagtgatgagggtaacatcat 40718190  T
Q  117 aattgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgat 216  Q
    |||||||||||||||||| |||||  || | |||||  |  | |||| ||| ||||||||||| ||||  || |  ||||||||||| ||||||||||||    
T  40718191 aattgattcaggtacaacgttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgat 40718290  T
Q  217 cctaatcaacaatt 230  Q
    || | |||||||||    
T  40718291 ccaactcaacaatt 40718304  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 14192295 - 14192404
Alignment:
Q  25 tactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgatt 124  Q
    |||| |||||||||  ||||||||||||||||||| | |||||||||| |||||||   |||  ||  ||||||| |||| |||||||||||||||||||    
T  14192295 tactatttgacattggaagcatttagtgttggaaatagaagagtagaaattggaggag-ttccaaa--tggtgataatgagggtaacatcataattgatt 14192391  T
Q  125 caggtacaacatt 137  Q
    | |||||||||||    
T  14192392 cgggtacaacatt 14192404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 14201301 - 14201350
Alignment:
Q  31 ttgacattacaagcatttagtgttggaaacaaaagagtagaatttggagg 80  Q
    ||||||||| ||||||||||||| |||||||||  | |||||||||||||    
T  14201301 ttgacattagaagcatttagtgtgggaaacaaattaatagaatttggagg 14201350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 14192436 - 14192492
Alignment:
Q  169 ttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaa 225  Q
    |||||||| |||||||| |||||||||||  |||| |||||||| ||||||| ||||    
T  14192436 ttggaatctgctgtggtagatttggtgaagttagaacgtgttgacgatcctactcaa 14192492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 34303063 - 34303279
Alignment:
Q  20 ttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataat 119  Q
    ||||||||| ||||||| || |||||||||| |||||| |||||||||||||||||| ||| || ||  ||   |||| ||| |||||||||||||||||    
T  34303063 ttttctactatttgacaatagaagcatttagcgttggagacaaaagagtagaatttgcagggtcctcaaaa---ggtgttgaagaaggtaacatcataat 34303159  T
Q  120 tgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcct 219  Q
    ||||||| ||||||   ||||| || ||||||| || || |||||||| ||| | |||||  | || |||||||||| |||||| || ||||||||||||    
T  34303160 tgattcaagtacaattgtgacatttgtaccatctgatgtttatactaaattgaattcagcaatcgtagatttggtgacactagaacgagttgatgatcct 34303259  T
Q  220 aatcaacaattcagcctatg 239  Q
    ||||||||||| || |||||    
T  34303260 aatcaacaatttagtctatg 34303279  T

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