View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10477_low_4 (Length: 240)

Name: NF10477_low_4
Description: NF10477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10477_low_4
NF10477_low_4
[»] chr5 (3 HSPs)
chr5 (18-240)||(34645874-34646096)
chr5 (18-240)||(34665568-34665790)
chr5 (18-237)||(19649452-19649671)
[»] chr4 (1 HSPs)
chr4 (18-237)||(45645070-45645289)
[»] chr8 (4 HSPs)
chr8 (18-240)||(40717578-40717800)
chr8 (18-237)||(14191759-14191978)
chr8 (18-146)||(14182819-14182947)
chr8 (18-123)||(14200773-14200878)
[»] chr6 (1 HSPs)
chr6 (18-174)||(34302532-34302688)
[»] chr2 (3 HSPs)
chr2 (18-120)||(28402701-28402803)
chr2 (18-120)||(45396682-45396784)
chr2 (18-120)||(44491536-44491638)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 34645874 - 34646096
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34645874 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 34645973  T
Q  118 tccttgttcatctaagctatgtcaatctgtgagagacacctcttgcagtgaccaaaattcttgtcaatataaaattagttatggagattcttcacattca 217  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34645974 tccttgttcgtctaagctatgtcattctgtgagagacacctcttgcagtgaccaaaattcttgtcaatataaaattagttatggagattcttcacattca 34646073  T
Q  218 caaggagatcttagtgttgatac 240  Q
    |||||||||||||||||||||||    
T  34646074 caaggagatcttagtgttgatac 34646096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 34665568 - 34665790
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34665568 gtagtgacattgtttggcttcaatgtgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 34665667  T
Q  118 tccttgttcatctaagctatgtcaatctgtgagagacacctcttgcagtgaccaaaattcttgtcaatataaaattagttatggagattcttcacattca 217  Q
    ||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34665668 tccttgtttgtctaagctatgtcattctgtgagagacacctcttgcagtgaccaaaattcttgtcaatataaaattagttatggagattcttcacattca 34665767  T
Q  218 caaggagatcttagtgttgatac 240  Q
    |||||||||||||||||||||||    
T  34665768 caaggagatcttagtgttgatac 34665790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 19649671 - 19649452
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||| ||||||||||| || |||||||| ||||||||||| ||||||||||| ||    
T  19649671 gtagtgacattgtttggcttcaatgtaagccttgtgaacaatgctacaagcaaaccactcctatatttaatccttcaaaatcatcaagttacaaaaatat 19649572  T
Q  118 tccttgttcatctaagctatgtcaatctgtgagagacacctcttgcagtgaccaaaattcttgtcaatataaaattagttatggagattcttcacattca 217  Q
    |||||| || |||||  ||||||||||||||||| | |||||||| | | | ||||| |||||| ||||||  ||||  | | | |||   ||| |||||    
T  19649571 tccttgctcttctaacttatgtcaatctgtgagatatacctcttgtaataaacaaaactcttgtgaatatactattaactttagtgatcaatcatattca 19649472  T
Q  218 caaggagatcttagtgttga 237  Q
    |||||||| |||||||||||    
T  19649471 caaggagaacttagtgttga 19649452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 45645070 - 45645289
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |  |||||||||||||||||||| ||||||| ||||||    
T  45645070 gtagtgacattgtttggcttcaatgcgagccttgtaaacaatgttacaaccaaaccactcctaagtttaatccatcaaaatcatcaagttacataaacat 45645169  T
Q  118 tccttgttcatctaagctatgtcaatctgtgagagacacctcttgcagtgaccaaaattcttgtcaatataaaattagttatggagattcttcacattca 217  Q
    ||||||||| ||||  |||||||| || ||||||   |||||||||| |||||||| || |||| |||||| |||||  |||||||||  ||||||||||    
T  45645170 tccttgttcttctatcctatgtcactcagtgagatctacctcttgcaatgaccaaattttttgtgaatatacaattaactatggagatgattcacattca 45645269  T
Q  218 caaggagatcttagtgttga 237  Q
    ||||||||||||||||||||    
T  45645270 caaggagatcttagtgttga 45645289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 40717578 - 40717800
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||||||| | ||||||||| ||    
T  40717578 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcctaagtttaaaccatcaaaatcatcaacttacaaaaatat 40717677  T
Q  118 tccttgttcatctaagctatgtcaatctgtgagagacacctcttgcagtgaccaaaattcttgtcaatataaaattagttatggagattcttcacattca 217  Q
     || ||||||||||| |||||||||||||||||||| | |||||| | || ||| |||| |||| ||||||  |||  ||||||||||  ||||||||||    
T  40717678 cccatgttcatctaacctatgtcaatctgtgagagatatctcttgtaatgcccacaatttttgtgaatatactatttcttatggagatcattcacattca 40717777  T
Q  218 caaggagatcttagtgttgatac 240  Q
    |||||||||||||||||||||||    
T  40717778 caaggagatcttagtgttgatac 40717800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 14191759 - 14191978
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    ||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||| || |||||||| || ||||| || ||||||||||||||    
T  14191759 gtagtgatattgtttggcttcaatgtgagccttgtcaagaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaacat 14191858  T
Q  118 tccttgttcatctaagctatgtcaatctgtgagagacacctcttgcagtgaccaaaattcttgtcaatataaaattagttatggagattcttcacattca 217  Q
    ||||||  |||| ||| | ||||||||| ||  ||| ||||| || | |||| |||||| |||| |||||   | |  |||||| |||  ||||||||||    
T  14191859 tccttgcccatcaaagttgtgtcaatctatggaagatacctcatgtaatgacaaaaattattgtgaatattctacttattatggtgataattcacattca 14191958  T
Q  218 caaggagatcttagtgttga 237  Q
      ||||||||||||||||||    
T  14191959 ggaggagatcttagtgttga 14191978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 14182819 - 14182947
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||| ||||| ||||| |  ||||| ||||||||||| || | ||||||||||||    
T  14182819 gtagtgacattgtttggcttcaatgcgagccttgcaaagaatgttacaatcaaacaactcctaagtttaaaccatcaaaatcgtcaacttacaaaaacat 14182918  T
Q  118 tccttgttcatctaagctatgtcaatctg 146  Q
    ||| ||||| ||| | |||||| ||||||    
T  14182919 tccatgttcgtctgacctatgtaaatctg 14182947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 14200773 - 14200878
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||||  ||||| ||| || || ||| | || |||  |||||| |||||| |||||||    
T  14200773 gtagtgaccttgtttggcttcaatgtgagccttgtaaacaatgttacccccaaatcacacctatatttgacccttcattatcatcaagttaccaaaacat 14200872  T
Q  118 tccttg 123  Q
     |||||    
T  14200873 accttg 14200878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 34302532 - 34302688
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||| ||||| ||||||||||||||    
T  34302532 gtagtgacattgtatggctacaatgcgagccttgtgaacaatgttacaatcaaaccactcctaagtttaatccatcaaagtcatcgagttacaaaaacat 34302631  T
Q  118 tccttgttcatctaagctatgtcaatctgtgagagacacctcttgcagtgaccaaaa 174  Q
    | ||||||| ||||| |||||||||||||||||||| |||||||||| |||| ||||    
T  34302632 ttcttgttcgtctaaactatgtcaatctgtgagagatacctcttgcaatgacaaaaa 34302688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 28402701 - 28402803
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    ||||| |||| ||||||||||||||| |||||||| |   ||||| ||| |||||| |||| || |||||||| |||||||| || ||||||||||| ||    
T  28402701 gtagtaacatagtttggcttcaatgccagccttgtcatacatgtttcaatcaaacctctcctatatttaatccttcaaaatcttcaagttacaaaaatat 28402800  T
Q  118 tcc 120  Q
    |||    
T  28402801 tcc 28402803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 45396784 - 45396682
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    ||||| |||| ||||||||||||||| |||||||| |   ||||| ||| |||||| |||| || |||||||| |||||||| || ||||||||||| ||    
T  45396784 gtagtaacatagtttggcttcaatgccagccttgtaatacatgtttcaatcaaacctctcctatatttaatccttcaaaatcttcaagttacaaaaatat 45396685  T
Q  118 tcc 120  Q
    |||    
T  45396684 tcc 45396682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 44491638 - 44491536
Alignment:
Q  18 gtagtgacattgtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 117  Q
    |||||||| | ||||||||||||||| |||||||  |   ||||||||| |||||| | || || |||||||| |||||||| || |||||||||| |||    
T  44491638 gtagtgacttagtttggcttcaatgcaagccttgcaatatatgttacaagcaaacctcgcctatatttaatccttcaaaatcttcaagttacaaaatcat 44491539  T
Q  118 tcc 120  Q
    |||    
T  44491538 tcc 44491536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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