View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_high_12 (Length: 323)
Name: NF10478_high_12
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 22645557 - 22645863
Alignment:
| Q |
1 |
atggtccaaacttttccccttcaaggtatgtactttaccattgaaaaagataaaatccttaacttcgatgaaattttacatttaggctaccccctactct |
100 |
Q |
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| T |
22645557 |
atggtccaaacttttccccttcaaggtatgtactttaccattgaaaaagataaaatccttaacttcgatgaaattttacatttaagctaccccctactct |
22645656 |
T |
|
| Q |
101 |
atattacggcattagctaagaacatgcatttgaaatttcatatatcttgtataaacatgaaaaagtgtaaactgtgaattgagaggcaaacatgaagtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22645657 |
atattacggcattagctaagaacatgcatttgaaatttcatatatcttgtataaacatgaaaaagtgtaaactgtgaattgagaggcaaacatgaagtta |
22645756 |
T |
|
| Q |
201 |
cttttacagtcattttactgtgaaatgtctaatatttaaggatggataacataacaaatcagtatgttaatggnnnnnnngcatataatccagtacaaca |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22645757 |
cttttacagtcattttaatgtgaaatgtctaatatttaaggatggataacataacaaatcagtatgttaatggtttttttgcatataatccagtacaaca |
22645856 |
T |
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| Q |
301 |
gaaaact |
307 |
Q |
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||||||| |
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| T |
22645857 |
gaaaact |
22645863 |
T |
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