View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_high_16 (Length: 256)
Name: NF10478_high_16
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 65 - 241
Target Start/End: Complemental strand, 52445330 - 52445158
Alignment:
| Q |
65 |
aaaaaatcaatgattcatactcatacgtatatattaactcatccaaatattcatttgtgaatatgtgcctttcattgatgactaatggagcagtgcaaag |
164 |
Q |
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| T |
52445330 |
aaaaaatcaatgattcatactcatacgtatatattaactcatccaaatattcatttgtgaatatgtgcctttcattgatgactaatggaacagtgcaaag |
52445231 |
T |
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| Q |
165 |
tgaaatatatatatgacgcgtaactaccaagaatgttaacaatactagtggattacggacaaggacatgttgcttat |
241 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52445230 |
tgaaat----atatgacgcgtaactaccaagaatgttaacaatactagtggattacggacaaggacatgttgcttat |
52445158 |
T |
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