View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10478_high_17 (Length: 253)
Name: NF10478_high_17
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6753474 - 6753707
Alignment:
| Q |
1 |
tgtgaattgtaatcacactaacctttagaatcaattttcccccaccaacttttgaatgttggatgcaaatggaatgtacaacaaattcccttcaggatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
6753474 |
tgtgaattgtaatcacactaacctttaaaatcaattttcccccaccaacttttgaatgttggatgcaaatggaatgtacaacgaattcccttcag-atac |
6753572 |
T |
|
| Q |
101 |
tctgattgccttcatgtggattgcataaacacaagcatatcttttgatgataatttacaaaaatatgtttcctacacttcaatcgtacattgagaaatga |
200 |
Q |
| |
|
| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6753573 |
tttaattgccttcatgtgaattgcataaacacaagcatatcttttgataataatttacaaaaatatgtttcctacacttcaatcatacattgagaaatga |
6753672 |
T |
|
| Q |
201 |
atgatgatttagagcgatataaatgggagagaaaa |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6753673 |
atgatgatttagagcgatataaatgggagagaaaa |
6753707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 32572464 - 32572616
Alignment:
| Q |
89 |
ccttcaggatactctgattgccttcatgtggattgcataaacacaag---catatcttttgatgataatttacaaaaatatgtttcctacacttcaatcg |
185 |
Q |
| |
|
||||||||||||| ||| | |||| |||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
32572464 |
ccttcaggatactttgaataccttgatgtggtttacataaacacaacaaacatatcttttgataataatttacaaaaatatgtttcctacacttgaatca |
32572563 |
T |
|
| Q |
186 |
tacatt-gagaaatgaatgatgatttagagcgatataaatgggagagaaaatg |
237 |
Q |
| |
|
| |||| |||||||||| ||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
32572564 |
tgcattagagaaatgaagaatgatttagagtgatgtaaataggagagaaaatg |
32572616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 928374 - 928542
Alignment:
| Q |
1 |
tgtgaattgtaatcacactaacctttagaatcaattttcccccaccaacttttgaatgttggatgcaaatggaatgtacaacaaattcccttcaggatac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| | |||||| | | ||||||||| | || |||||||||||||| ||||||| ||||| ||||| ||||| |
|
|
| T |
928374 |
tgtgaattgtgatcacactaacctttaaagtcaattcgctctcaccaacttgtagatattggatgcaaatgggatgtacagtgaattctcttcaagatac |
928473 |
T |
|
| Q |
101 |
tctgattgccttcatgtggattgcataaac---acaagcatatcttttgatgataatttacaaaaatat |
166 |
Q |
| |
|
| ||| | |||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
928474 |
tttgaataccttgatgtggtttgcataaacacaacaagcatatcttttgataataatttacaaaaatat |
928542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 33903693 - 33903594
Alignment:
| Q |
137 |
atatcttttgatgataatttacaaaaatatgtttcctacacttcaatcgtacatt-gagaaatgaatgatgatttagagcgatataaatgggagagaaaa |
235 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||||||||||||| ||||| | |||| |||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
33903693 |
atatattttgataatagtttacaaaaatatgtttcctacactgcaatcatgcattagagaaatgaagaatgatttagagggaagtaaatgggagagaaaa |
33903594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 22523596 - 22523824
Alignment:
| Q |
12 |
atcacactaacctttagaatcaattttcccccaccaacttttgaatgttggatgcaaatggaatgtacaacaaattcccttcaggatactctgattgcct |
111 |
Q |
| |
|
|||||||||| ||||||| ||| || ||||| ||||||| || ||||||||||||| ||||||||||||||| || ||||||| || | || |
|
|
| T |
22523596 |
atcacactaatctttagagtcatttcgtccccatcaactttctgatattggatgcaaatgagatgtacaacaaattcttttaaggatacattgtatacca |
22523695 |
T |
|
| Q |
112 |
tcatgtggatt-gcataaaca---caagcatatcttttgatgataatttacaaaaatatgtttcctacacttcaatcgtacatt-gagaaatgaatgatg |
206 |
Q |
| |
|
| |||||| || ||||||||| ||| ||||| |||| || ||| ||||||||||||| ||||||||| ||||||| | ||| ||||||||||||||| |
|
|
| T |
22523696 |
tgatgtgggtttgcataaacataacaatcatatttttttataatagtttacaaaaatatatttcctacatttcaatcatgaattagagaaatgaatgatg |
22523795 |
T |
|
| Q |
207 |
atttagagcgatataaatgggagagaaaa |
235 |
Q |
| |
|
|||||||| | | ||||||||| |||||| |
|
|
| T |
22523796 |
atttagagtggtgtaaatgggatagaaaa |
22523824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 52984466 - 52984421
Alignment:
| Q |
131 |
acaagcatatcttttgatgataatttacaaaaatatgtttcctaca |
176 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
52984466 |
acaagcctatcttttgataatagtttacaaaaatatgtttcataca |
52984421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University