View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_high_18 (Length: 253)
Name: NF10478_high_18
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14812528 - 14812285
Alignment:
| Q |
1 |
ttccaccgccgcagaactcgtcgctgtcttcgacgaagacggtgattcgacgaaaaatttcctcaccggtgaacggtttccagattcattatcgtaatcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812528 |
ttccaccgccgcagaactcgtcgctgtcttcgacgaagacggtgattccacgaaaaatttcctcaccggtgaacggtttccagattcattatcgtaatcg |
14812429 |
T |
|
| Q |
101 |
tcggtgaaatgaagatcctgaccgnnnnnnnnnnnnntcggacgaatctgacctttatcgaacacatcgtcagcggaaatcggtgaacctttaggatctg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812428 |
tcggtgaaatgaagatcctgaccgaaaaaaggaaaaatcggacgaatctgacctttatcgaacacatcgtcagcggaaatcggtgaacctttaggatctg |
14812329 |
T |
|
| Q |
201 |
cgaaaacaaatgtaaactcatcatcatcttcatcttcttcttct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812328 |
cgaaaacaaatgtaaactcatcatcatcttcatcttcttcttct |
14812285 |
T |
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