View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10478_high_2 (Length: 705)

Name: NF10478_high_2
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10478_high_2
NF10478_high_2
[»] chr2 (8 HSPs)
chr2 (531-695)||(14645666-14645830)
chr2 (323-538)||(14662087-14662296)
chr2 (534-695)||(14661891-14662052)
chr2 (392-538)||(14645862-14646008)
chr2 (138-289)||(14662328-14662476)
chr2 (139-289)||(45338572-45338715)
chr2 (338-376)||(14646408-14646446)
chr2 (139-289)||(45336260-45336403)
[»] chr3 (7 HSPs)
chr3 (136-289)||(48027288-48027438)
chr3 (136-289)||(48025108-48025258)
chr3 (138-289)||(48023999-48024147)
chr3 (136-289)||(48024548-48024698)
chr3 (139-289)||(28784514-28784657)
chr3 (139-214)||(5354612-5354686)
chr3 (139-214)||(48707695-48707769)
[»] chr7 (2 HSPs)
chr7 (141-289)||(13111118-13111263)
chr7 (156-289)||(13108840-13108970)
[»] chr6 (1 HSPs)
chr6 (227-289)||(6723461-6723523)
[»] chr5 (2 HSPs)
chr5 (139-289)||(32798007-32798150)
chr5 (139-289)||(32800319-32800462)
[»] chr8 (2 HSPs)
chr8 (139-289)||(44734153-44734296)
chr8 (227-289)||(44731842-44731904)
[»] chr1 (2 HSPs)
chr1 (227-288)||(9535257-9535318)
chr1 (139-289)||(1550157-1550300)
[»] chr4 (2 HSPs)
chr4 (138-289)||(7230963-7231108)
chr4 (139-289)||(22804610-22804755)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 1e-80; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 531 - 695
Target Start/End: Complemental strand, 14645830 - 14645666
Alignment:
Q  531 tcgttcctcgatcaggcaatacatcagaactggaatttttctgattcagtccaaacttcaaagcatcagcagagcttacaccaaatgctgtttcagaggc 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  14645830 tcgttcctcgatcaggcaatacatcagaactggaatttttctgattcagtccaaacttcaaagcatcagtaaagcttacaccaaatgctgtttcagaggc 14645731  T
Q  631 atgcgtttgcaaattatttggaccctcagacattggcatttgatataaagcatacagtgcctttg 695  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14645730 atgcgtttgcaaattattttgaccctcagacattggcatttgatataaagcatacagtgcctttg 14645666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 323 - 538
Target Start/End: Complemental strand, 14662296 - 14662087
Alignment:
Q  323 tatcaatctccaacagcatccaaggagcaaacaccagaagtgacctcaacctgannnnnnnnnnnnnnntcagacacatatttatcttcgataatgttgc 422  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||               ||||||| |||||||||||||||||||||||    
T  14662296 tatcaatctccaacagcatccaaagagcaaacaccagaagtgacctcaacctgatctctctct------tcagacagatatttatcttcgataatgttgc 14662203  T
Q  423 caaacctgctagaatgtctagaactcattgtcttcgttggttttgaatccgtagcatgttgattcatgtcattcatgcttctattttttccgtatgcttg 522  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14662202 caaacctgctagaatgtctagaactcattgtcttcgttggttttgaatccgtagcatgttgattcacgtcattcatgcttctattttttccgtatgcttg 14662103  T
Q  523 agcattgatcgttcct 538  Q
    |||||||||| |||||    
T  14662102 agcattgatctttcct 14662087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 534 - 695
Target Start/End: Complemental strand, 14662052 - 14661891
Alignment:
Q  534 ttcctcgatcaggcaatacatcagaactggaatttttctgattcagtccaaacttcaaagcatcagcagagcttacaccaaatgctgtttcagaggcatg 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  14662052 ttcctcgatcaggcaatacatcagaactggaatttttctgattcagtccaaacttcaaagcatcagcagagctctcaccaaatgcagtttcagaggcatg 14661953  T
Q  634 cgtttgcaaattatttggaccctcagacattggcatttgatataaagcatacagtgcctttg 695  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||    
T  14661952 tgtttgcaaattattttgaccctcagacattggcatttgatataaagcacacggtgcctttg 14661891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 392 - 538
Target Start/End: Complemental strand, 14646008 - 14645862
Alignment:
Q  392 tcagacacatatttatcttcgataatgttgccaaacctgctagaatgtctagaactcattgtcttcgttggttttgaatccgtagcatgttgattcatgt 491  Q
    |||||||||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| ||    
T  14646008 tcagacacatgtttatcttcgatcatgttgtcaaacctgctagaatgtttagaactcattgtcttcattggttttgaatccgtaggatgttgattcacgt 14645909  T
Q  492 cattcatgcttctattttttccgtatgcttgagcattgatcgttcct 538  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  14645908 cattcatgcttctattttttccggatgcttgagcattgatctttcct 14645862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 138 - 289
Target Start/End: Complemental strand, 14662476 - 14662328
Alignment:
Q  138 gaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaat 237  Q
    |||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |       |||||||||||    
T  14662476 gaacataagatctgcacgaaatctactcttaagcactagtcattattacctagcaacaatagacatcattacctagggactg---ttttacttactaaat 14662380  T
Q  238 aagcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14662379 aagcaacgatctaattatgacacttatacataaacaagcaacactttaatta 14662328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 139 - 289
Target Start/End: Complemental strand, 45338715 - 45338572
Alignment:
Q  139 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaata 238  Q
    |||||||||||||||| ||||||||||| || |||  ||||| ||||||||  ||| ||||| ||||||||||||| ||         |||||| |||||    
T  45338715 aacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacctagg-ac-----tcttacttaccaaata 45338623  T
Q  239 agcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||||| |||||| ||||||||||| || |||||||||||||| |||||||    
T  45338622 agcaacaatctaactatgacacttaaacttaaacaagcaacacattaatta 45338572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 14646446 - 14646408
Alignment:
Q  338 gcatccaaggagcaaacaccagaagtgacctcaacctga 376  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14646446 gcatccaaggagcaaacaccagaagtgacctcaacctga 14646408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 289
Target Start/End: Complemental strand, 45336403 - 45336260
Alignment:
Q  139 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaata 238  Q
    |||||||||||||||| ||||||||||| || |||  ||||| ||||||||  ||| ||||| ||||||||||||| ||         |||||| |||||    
T  45336403 aacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacctagg-ac-----tcttacttaccaaata 45336311  T
Q  239 agcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||||| |||||| ||||||||||| || || ||||||||||| |||||||    
T  45336310 agcaacaatctaaatatgacacttaaacttacacaagcaacacattaatta 45336260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 136 - 289
Target Start/End: Original strand, 48027288 - 48027438
Alignment:
Q  136 aggaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaa 235  Q
    ||||||||||||||| ||| ||||||||||||||||||  ||||| ||||||||  |||||||||||||||||||||||||| |       |||||||||    
T  48027288 aggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattacctagggactgtttt---acttactaa 48027384  T
Q  236 ataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  48027385 ataagcaacaatctaattatgacacttatacataaacaagcaacacttaaatta 48027438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 136 - 289
Target Start/End: Original strand, 48025108 - 48025258
Alignment:
Q  136 aggaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaa 235  Q
    ||||||||||||||| ||| ||||||||||||||||||  ||||| ||||||||  ||||||||||||||||| || ||||  |       |||||||||    
T  48025108 aggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattaacttgggattgtttt---acttactaa 48025204  T
Q  236 ataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  48025205 ataagcaacaatctaattatgacatttatacataaacaagcaacactttaatta 48025258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 138 - 289
Target Start/End: Original strand, 48023999 - 48024147
Alignment:
Q  138 gaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaat 237  Q
    ||||||||||||||||| ||||||||||||||||||  ||||| ||||||||    || ||||||||||||||| ||||| |       |||||||||||    
T  48023999 gaacataaaatctgcactaaatctactcttaagcactagtcatcattacctaagttcattagacatcattaccttgggactgtttt---acttactaaat 48024095  T
Q  238 aagcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  48024096 aagcaacaatctaattatgacacttatacataaacaagtaacactttaatta 48024147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 136 - 289
Target Start/End: Original strand, 48024548 - 48024698
Alignment:
Q  136 aggaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaa 235  Q
    ||||||||||||||| ||| ||||||||| ||||||||  ||||| ||||||||  ||||||| |||||||||||| ||||| |       |||||||||    
T  48024548 aggaacataaaatctacactaaatctactattaagcactagtcatcattacctaagaacaataaacatcattaccttgggactgtttt---acttactaa 48024644  T
Q  236 ataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||    
T  48024645 ataagcaacaatctaattatgacacttatacataaacatgcaacattttaatta 48024698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 139 - 289
Target Start/End: Complemental strand, 28784657 - 28784514
Alignment:
Q  139 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaata 238  Q
    |||||||||||||||| |||||||||| ||| |||  ||||| ||||||||  ||| ||||||||||||||||| ||||         |||||| |||||    
T  28784657 aacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagacatcattaccta-ggac-----tcttacttaccaaata 28784565  T
Q  239 agcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||||| |||||| ||| ||||||| || |||||||||||||| |||||||    
T  28784564 agcaacaatctaactataacacttaaacttaaacaagcaacacattaatta 28784514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 5354612 - 5354686
Alignment:
Q  139 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 214  Q
    |||||||||||||||| |||||||||| ||| |||  ||||||||||||||  ||| ||| |||||||||||||||    
T  5354612 aacataaaatctgcactaaatctactc-taaacactagtcattattacctaagaaccataaacatcattacctagg 5354686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 48707695 - 48707769
Alignment:
Q  139 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 214  Q
    |||||||||||| ||| ||||||||| |||| |||  ||||| ||||||||  ||| |||||||||||||||||||    
T  48707695 aacataaaatctacactaaatctact-ttaaacactagtcatcattacctaaaaaccatagacatcattacctagg 48707769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 13111118 - 13111263
Alignment:
Q  141 cataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaataag 240  Q
    |||||||| ||||| ||||||||||||||||||  ||||| ||||||||  |||||||||||| |||||||||||||         ||||||||||||||    
T  13111118 cataaaatttgcactaaatctactcttaagcactagtcatcattacctaagaacaatagacattattacctagggac---tattttacttactaaataag 13111214  T
Q  241 caactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  13111215 caacaatctaattatggcacttctacataaacaagcaacactttaatta 13111263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 13108840 - 13108970
Alignment:
Q  156 aaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaataagcaactatctaattat 255  Q
    ||||||||||||||||||  ||||| |||||| |  |||||||   |||||||||||||||| |       |||||||||||||||||| ||||||||||    
T  13108840 aaatctactcttaagcactagtcatcattacccaagaacaatatgtatcattacctagggactgtttt---acttactaaataagcaacaatctaattat 13108936  T
Q  256 gacacttatacataaacaagcaacactttaatta 289  Q
    |||||||||| |||||||||||||||||||||||    
T  13108937 gacacttataaataaacaagcaacactttaatta 13108970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 6723523 - 6723461
Alignment:
Q  227 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||    
T  6723523 acttactaaataagcaacaatctaattatgacacttacacttaaacaagcaacactttaatta 6723461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 289
Target Start/End: Complemental strand, 32798150 - 32798007
Alignment:
Q  139 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaata 238  Q
    |||||||||||||||| ||||||||||| || |||  ||||| ||||||||  ||| ||||| ||||||||||||| ||         |||||| |||||    
T  32798150 aacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacctagg-ac-----tcttacttaccaaata 32798058  T
Q  239 agcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||||| |||||||||||||||||| || |||||||||||||| |||||||    
T  32798057 agcaacaatctaattatgacacttaaacttaaacaagcaacacattaatta 32798007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 289
Target Start/End: Complemental strand, 32800462 - 32800319
Alignment:
Q  139 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaata 238  Q
    |||||||||||||||| ||||||||||| || |||  ||||| ||||||||  ||| ||||| ||||||||||||| ||         |||||| |||||    
T  32800462 aacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacctagg-ac-----tcttacttaccaaata 32800370  T
Q  239 agcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||||| |||||||||||||||||| || |||||||||||||| |||||||    
T  32800369 agcaacaatctaattatgacacttaaacttaaacaagcaacacattaatta 32800319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 139 - 289
Target Start/End: Complemental strand, 44734296 - 44734153
Alignment:
Q  139 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaata 238  Q
    |||||||||||||||| |||||||||| ||| |||  ||||| ||||||||  ||| ||||||||||||||||| ||||         |||||| |||||    
T  44734296 aacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagacatcattaccta-ggac-----tcttacttaccaaata 44734204  T
Q  239 agcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||||| | |||| ||||||||||| || |||||||||||||| |||||||    
T  44734203 agcaacaacctaactatgacacttaaacttaaacaagcaacacattaatta 44734153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 44731904 - 44731842
Alignment:
Q  227 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||||| ||||||||||| |||||| ||||||||||| || |||||||||||||| |||||||    
T  44731904 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatta 44731842  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 9535318 - 9535257
Alignment:
Q  227 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatt 288  Q
    |||||| ||||||||||| |||||||||||||||||| || |||||||||||||| ||||||    
T  9535318 acttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaatt 9535257  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 289
Target Start/End: Complemental strand, 1550300 - 1550157
Alignment:
Q  139 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaata 238  Q
    |||||||||||||||| ||||||||||| || |||  ||||| ||||||||  ||| ||||| ||||||||||||| ||         |||||| |||||    
T  1550300 aacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacctagg-ac-----tcttacttaccaaata 1550208  T
Q  239 agcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||||| |||||| ||||||||||| || || ||||||||||| |||||||    
T  1550207 agcaacaatctaactatgacacttaaacttatacaagcaacacattaatta 1550157  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 138 - 289
Target Start/End: Original strand, 7230963 - 7231108
Alignment:
Q  138 gaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaat 237  Q
    ||||||||||||||||| |||||| |||| || |||  ||||| ||||||||| ||| ||||||||||||||||| ||||         |||||||||||    
T  7230963 gaacataaaatctgcactaaatctgctctaaa-cactagtcatcattacctaggaaccatagacatcattacctacggac---tactttacttactaaat 7231058  T
Q  238 aagcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    ||||| | ||||||||||||||||   || ||||||||||||| | ||||||    
T  7231059 aagcagcaatctaattatgacact--aacttaaacaagcaacaatctaatta 7231108  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 289
Target Start/End: Complemental strand, 22804755 - 22804610
Alignment:
Q  139 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggaccgnnnnnnnacttactaaata 238  Q
    |||||||||||||||  ||||||||||| || |||  ||||| ||||||||  ||| ||||||||||||||||| ||||         |||||| |||||    
T  22804755 aacataaaatctgcattaaatctactctaaa-cactagtcatcattacctaagaaccatagacatcattaccta-ggac---tcttttacttaccaaata 22804661  T
Q  239 agcaactatctaattatgacacttatacataaacaagcaacactttaatta 289  Q
    |||| | ||||||||||| |||||| || |||||||||||| | |||||||    
T  22804660 agcagcaatctaattatggcacttaaacttaaacaagcaacgcattaatta 22804610  T

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