View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_high_24 (Length: 239)
Name: NF10478_high_24
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 34058095 - 34058211
Alignment:
| Q |
23 |
aaaagcaaggtaaaaggaaaatgggacaatattaaaaacatatcggcaaaatctacattaactgtataacattaattacacatctatttttggagcgaga |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34058095 |
aaaagcaaggtaaaaggaaaatgggacaatattaaaaatatatcggcaaaatctacattaactgtataacattaattacacatctatttttggagcgaga |
34058194 |
T |
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| Q |
123 |
atagaagctaacaaaaa |
139 |
Q |
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||||||||||||||||| |
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| T |
34058195 |
atagaagctaacaaaaa |
34058211 |
T |
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Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 34058363 - 34058456
Alignment:
| Q |
130 |
ctaacaaaaacagaattgctattttctctttcctttattcttacttcgttcaccttccttctctccctcatctccaatacttccttcacgtttt |
223 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34058363 |
ctaacaaaaagagaattgctattttctctttcctttattcttacttcgttcaccttccttctctccctcatctccaatacttccttcacgtttt |
34058456 |
T |
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