View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10478_high_25 (Length: 238)
Name: NF10478_high_25
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 13591146 - 13591359
Alignment:
| Q |
11 |
agcacagacaccgtcaacatgcacggaagcaagataaccgtgactgttacagccttcgcctccatagtggaaaactggatcaaaacaacattcatcttcg |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13591146 |
agcacatacaccgtcaacatgcacggaagcaagataaccgtgactgttacagccttcgcctccatagtggaaaactggatcaaaacaacattcatcttcg |
13591245 |
T |
|
| Q |
111 |
agcgcgaagactacgaatggcggtcactcctcaccggcatcgcagtcgatcctagggcagacactttgcaactctgcaccggtaaccggtgccttatatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13591246 |
agcgcgaagactacgaatggcggtcactcctcaccggcatcgcagtcgatcctagggcagacactttgcaactctgcaccggtaaccggtgccttatatt |
13591345 |
T |
|
| Q |
211 |
ccaactaggtcatg |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13591346 |
ccaactaggtcatg |
13591359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University