View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_high_27 (Length: 233)
Name: NF10478_high_27
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_high_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 6752963 - 6753197
Alignment:
| Q |
1 |
atccaaacatgtcagtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaacaaaatctcctatcaaagcatggttg |
100 |
Q |
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| T |
6752963 |
atccaaacatgtcagtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaacaaaatctcctatcaaagcatggttg |
6753062 |
T |
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| Q |
101 |
gtaac--tttgctgtgacaagttgagtcctaactcaatgnnnnnnncatgtttgtaatatatgaatcttacccttcattttcatgtttataacagtagca |
198 |
Q |
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| T |
6753063 |
gtaacctctcgctgtgacaag-tgagtcctaactcaatgtttttttcatgtttgtaatatatgaatcttacccttcattttcatgtttataacagtagca |
6753161 |
T |
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| Q |
199 |
atttctgtt-tacacttttgttttatttggaatgtt |
233 |
Q |
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| T |
6753162 |
atttctgttctacactttttttttatttggaatgtt |
6753197 |
T |
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