View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_high_3 (Length: 512)
Name: NF10478_high_3
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 7612882 - 7613372
Alignment:
| Q |
1 |
aggaatagggttattgtggagttcggtgaatattggattagggctttcaataatttataaactccaagttgacctaaaccaagccggtcatcggtgcatt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7612882 |
aggattagggttattgtggagttcggtgaatattgaattagggctttcagtaatttataaactccaagttgacctaaacca---cggtcatcggtgcatt |
7612978 |
T |
|
| Q |
101 |
gggttgggatcttgaaatgtgcataaaatgcttatttaaaattctatacaaaaatattactagcaagtatccctccnnnnnnn-gtactaattgaaaaag |
199 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
7612979 |
gggttgggatcttggattgtgcataaaatgcttatttaaaattctatacaaaaatattactagcacatatccctccaaaaaaaagtactaattgaaaaag |
7613078 |
T |
|
| Q |
200 |
aaacnnnnnnnnagggaagtagaaaaagaaacttgttagctcggccctccataattagttgcgattttggttccctattnnnnnnnngtcatggatacag |
299 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7613079 |
aaacttttttttagggaagtagaaaaagaaacttgttagctcggccctccataattagttgcgattttggttccctattaaaaaaaa-tcatggatacag |
7613177 |
T |
|
| Q |
300 |
taagatttttaaaattaagaggaaatggtgtcattgtttaagacggatttgtatgtaacagttttcaaattttttacttaactttagatgtggcggcatt |
399 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7613178 |
taagatttttaaaattaagaggaaatggggtcattgtttaagacggatttgtatgtaacagttttcaaattttttacttaactttagatgtggcggcatt |
7613277 |
T |
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| Q |
400 |
tttaaaattaagcagaaattgtgccaatgtttaagacgaactttgtttgtaaactgcttcaacattgttactcttatgttgggttgatcatgttc |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7613278 |
tttaaaattaagcagaaattgtgccaatgtttaagacgaactttgtttgtaaactgcttcaacattgttactcttatgttgggttgatcatgttc |
7613372 |
T |
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