View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10478_high_5 (Length: 420)
Name: NF10478_high_5
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 42634923 - 42635325
Alignment:
| Q |
1 |
caggagtgacgaaaaaagtgataggattgtcgaaattgattcgggaaaacaacacatcaacacaaaacgcagaaacatctttcactccacaagtgatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42634923 |
caggagtgacgaaaaaagtgataggattgtcgaaattgattcgggaaaacaacacatcaacacaaaacgcagaaacatctttcactccacaagtgatcct |
42635022 |
T |
|
| Q |
101 |
gattattattatagtcagaatttgacccctacaaaggaatcaaaatctcatcaatttggtcaaagtgtatcttgtgaggttcaatcttattacaacccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42635023 |
gattattattatagtcagaatttgacccctacaaaggaatcaaaatctcatcaatttggtcaaagtgtatcttgtgaggttcaatcttattacaacccac |
42635122 |
T |
|
| Q |
201 |
taaaacttaacgaagttgaagagaactcgttttgcaccgcaaacaatagtcctcaacttttatcatctgcaacttcaaaagatgatggttacaacataag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42635123 |
taaaacttaacgaagttgaagagaactcgttttgcaccgcaaacaatagtcctcaacttttatcatctgcaacttcaaaagatgatggttacaacagaag |
42635222 |
T |
|
| Q |
301 |
tccttttactcctacaagaagtgatggcccaagaagctacattagaggctactctgattacccaagttacatggcttatacagagtcggcaaaggccaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42635223 |
tccttttactcctacaagaagtgatggcccaagaagctacattagaggctactctgattacccaagttacatggcttatacagagtcggcaaaggccaaa |
42635322 |
T |
|
| Q |
401 |
gtt |
403 |
Q |
| |
|
||| |
|
|
| T |
42635323 |
gtt |
42635325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 402
Target Start/End: Complemental strand, 44096969 - 44096871
Alignment:
| Q |
304 |
ttttactcctacaagaagtgatggcccaagaagctacattagaggctactctgattacccaagttacatggcttatacagagtcggcaaaggccaaagt |
402 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
44096969 |
ttttactccaacaagaagtgatggctcaagaaactacgttagaggctgctctaattacccaagttacatggcttatacagagtcagcaaaagccaaagt |
44096871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University