View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_high_7 (Length: 402)
Name: NF10478_high_7
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 35 - 347
Target Start/End: Original strand, 7266868 - 7267180
Alignment:
| Q |
35 |
agagatgaaaactatagtatctactcaaagaatacttgtcgtcatccctaattgtgcgttaacactcctcaattcaaaatgacataatagcatgcttgtt |
134 |
Q |
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| T |
7266868 |
agagatgaaaactatagtatctactcaaagaatacttgtcgtcatccctaattgtgcgttaacactcctcaattcaaaatgacataatagcatgcttgtt |
7266967 |
T |
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| Q |
135 |
gaggaaaaattattgcctttattataacaaaattagttaatttttcttttgaggaaaactgaattagttaatgaaaattaagtaaacgactatgaagata |
234 |
Q |
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| T |
7266968 |
gaggaaaaattattgcctttattataacaaaattagttaatttttcttttgaggaaaactgaattagttaatgaaaattaagtaaacgactatgaagata |
7267067 |
T |
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| Q |
235 |
atttaaatttatacaaatcgtcacttgaccaatcttattgcaataaattaatgaaaagtcatttcaaaaagatttgtggctgatccttaaaaaataaaat |
334 |
Q |
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| T |
7267068 |
atttaaatttatacaaatcgtcacttgaccaatcttattgcaataaattaataaaaagtcatttcaaaaagatttgtggctgatccttaaaaaataaaat |
7267167 |
T |
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| Q |
335 |
cattccgtgacaa |
347 |
Q |
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| T |
7267168 |
cattccgtgacaa |
7267180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 47 - 386
Target Start/End: Original strand, 7279241 - 7279579
Alignment:
| Q |
47 |
tatagtatctactcaaagaatacttgtcgtcatccctaattgtgcgttaacactcctcaattcaaaatgacataatagcatgcttgttgaggaaaaatta |
146 |
Q |
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| T |
7279241 |
tatagtacctactcaaagaatacttgttatcatccctaattgtgcgctaacactcctcaattcaaaatgacataatagcatgcttgttgaggaaaaatta |
7279340 |
T |
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| Q |
147 |
ttgcctttattataacaaaattagttaatttttcttttgaggaaaactgaattagttaatgaaaattaagtaaacgactatgaagataatttaaatttat |
246 |
Q |
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| T |
7279341 |
ttgcctttattataacaaaattagttaattttttttttgaggaaaactgaattagttagtgaaaattaagtaaaagactatgaagataatttaaatttat |
7279440 |
T |
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| Q |
247 |
acaaatcgtcacttgaccaatcttattgcaataaattaatgaaaagtcatttcaaaaagatttgtggctgatccttaaaaaataaaatcattccgtgaca |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7279441 |
acaaatcgtcacttgaccaatcttattgcaataaattaataaaacgtcatttcaaaaagatttgtggctgatccttaaaaaataaaatcattccgtgac- |
7279539 |
T |
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| Q |
347 |
aannnnnnnnaatctttttcaaatctttactctaaatctt |
386 |
Q |
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| T |
7279540 |
aattttttttattctttttcaaatctttactctaaatctt |
7279579 |
T |
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