View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10478_high_9 (Length: 353)

Name: NF10478_high_9
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10478_high_9
NF10478_high_9
[»] chr5 (5 HSPs)
chr5 (8-353)||(29688389-29688734)
chr5 (8-320)||(29711894-29712209)
chr5 (8-249)||(29696600-29696844)
chr5 (225-266)||(179405-179446)
chr5 (208-263)||(9120113-9120168)
[»] chr4 (21 HSPs)
chr4 (120-257)||(48853037-48853174)
chr4 (160-266)||(45365828-45365934)
chr4 (120-254)||(49043736-49043870)
chr4 (161-266)||(7790427-7790532)
chr4 (129-266)||(7771742-7771879)
chr4 (173-253)||(49038499-49038579)
chr4 (184-255)||(45384524-45384595)
chr4 (172-263)||(48899090-48899181)
chr4 (129-263)||(7773402-7773536)
chr4 (189-266)||(7878730-7878807)
chr4 (176-257)||(48870916-48870997)
chr4 (176-257)||(48876220-48876301)
chr4 (176-257)||(48886602-48886683)
chr4 (198-254)||(48147359-48147415)
chr4 (191-257)||(45371713-45371779)
chr4 (191-253)||(48864395-48864457)
chr4 (161-266)||(7908649-7908754)
chr4 (207-252)||(47208238-47208283)
chr4 (191-263)||(7765992-7766064)
chr4 (191-263)||(7786814-7786886)
chr4 (188-252)||(7813838-7813902)
[»] chr6 (1 HSPs)
chr6 (120-254)||(21016180-21016314)
[»] chr3 (3 HSPs)
chr3 (67-264)||(47451412-47451612)
chr3 (198-252)||(11024149-11024203)
chr3 (209-261)||(11015148-11015200)
[»] chr8 (3 HSPs)
chr8 (198-266)||(12195671-12195739)
chr8 (198-266)||(12440099-12440167)
chr8 (191-252)||(15349244-15349305)
[»] chr7 (1 HSPs)
chr7 (63-100)||(30124825-30124862)


Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 29688734 - 29688389
Alignment:
Q  8 aagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcattatacttggccaat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29688734 aagcagagattctgtatacataaccactagggatccatattcatggtccgagtaggagtgatgctctagcagctgtcctttatcattatacttggccaat 29688635  T
Q  108 acattatcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688634 acattatcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttg 29688535  T
Q  208 tccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatcagtgcacatatcaaatagactgagacatcctctgaatagcca 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688534 tccaagacgattgcacattgtattttttcatcacccatatttcaactgtaccattatcagtgcacatatcaaatagactgagacatcctctgaatagcca 29688435  T
Q  308 taaatcatacactctaggaccattatttataccaataggcaaaggc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29688434 taaatcatacactctaggaccattatttataccaataggcaaaggc 29688389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 29711894 - 29712209
Alignment:
Q  8 aagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcattatacttggccaat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||  |||| || |||||||||||||| |||||||| ||||||||||||||||||    
T  29711894 aagcagagattctgtatacataaccactagggatccatattcattgtcacagtaggactgatgctctagcagttgtcctttctcattatacttggccaat 29711993  T
Q  108 acattatcgtcg---gttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtct 204  Q
    |||||| |  |    |||||||||||||||||||||||||||   |||||||||||||| || ||  |||||||  || ||||||| | ||| |||||||    
T  29711994 acattaccagcatttgttccaacgatatcaccactttttgtatcgtatttcggacaaaaataatggctgggaattccatcaaaagacaaaacaagagtct 29712093  T
Q  205 ttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca-gtgcacatatcaaatagactgagacatcctctgaata 303  Q
    | |||||||| |||   ||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||||| ||||    
T  29712094 tagtccaagaagatgtcacattgtatttttccatcacccatatttcaactgtaccattatcatgtgc-catatcccatagactgagacatcctctaaata 29712192  T
Q  304 gccataaatcatacact 320  Q
     ||||||||||||||||    
T  29712193 cccataaatcatacact 29712209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 29696844 - 29696600
Alignment:
Q  8 aagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcattatacttggccaat 107  Q
    |||||||||||||||||||||||||||| ||||| |||||| |  |||  |||| |||||||| ||| ||||||||||||| ||||||||||||||||||    
T  29696844 aagcagagattctgtatacataaccactggggatacatattgactgtcacagtaggagtgatgttcttgcagctgtcctttgtcattatacttggccaat 29696745  T
Q  108 acattatc---gtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtct 204  Q
     ||  |     ||   |||||||||||||||||||||||||| | |||||||| |||||| |||||   ||| || || ||||||| || || |||||||    
T  29696744 gcacaacgcatgtttcttccaacgatatcaccactttttgtatagtatttcggccaaaaggagtgagcaggattgccatcaaaagacaggacaagagtct 29696645  T
Q  205 ttgtccaagacgattgtacattgtattttttcatcacccatattt 249  Q
    | |||||||| ||||| ||||||||||||| ||||||||||||||    
T  29696644 tagtccaagaggattgcacattgtatttttccatcacccatattt 29696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 179446 - 179405
Alignment:
Q  225 ttgtattttttcatcacccatatttcaactgtaccattatca 266  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  179446 ttgtattctttcatcacccatatttcaactgtatcattatca 179405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 9120168 - 9120113
Alignment:
Q  208 tccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 263  Q
    ||||||| || || || ||||||| ||||||||||||||||||||||||| |||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcatta 9120113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 48853174 - 48853037
Alignment:
Q  120 gttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgatt 219  Q
    |||||||  ||||||||||| ||||||||| || | ||  ||||||||||| ||||||||  || |||||||||||| |||||||| |||||||||||      
T  48853174 gttccaataatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaac 48853075  T
Q  220 gtacattgtattttttcatcacccatatttcaactgta 257  Q
    | || ||||||| |||||| ||||||||||||||||||    
T  48853074 gcactttgtattctttcatgacccatatttcaactgta 48853037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 45365828 - 45365934
Alignment:
Q  160 aaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacc 259  Q
    ||||||| ||| |||||||| || ||| || ||||||| |||||||||||||||||||  | || || |||| ||||||||||||||||||||||||| |    
T  45365828 aaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatc 45365927  T
Q  260 attatca 266  Q
    |||||||    
T  45365928 attatca 45365934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 120 - 254
Target Start/End: Original strand, 49043736 - 49043870
Alignment:
Q  120 gttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgatt 219  Q
    |||||||  ||||||||| ||||||||||| || | |||   ||||| ||| |||||||| || ||| ||||| ||| |||||||| ||||| ||||| |    
T  49043736 gttccaataatatcaccaatttttgtacaacatattggagcgaagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaat 49043835  T
Q  220 gtacattgtattttttcatcacccatatttcaact 254  Q
    | || ||||||| ||||||||||||||||||||||    
T  49043836 gcactttgtattctttcatcacccatatttcaact 49043870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 7790532 - 7790427
Alignment:
Q  161 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacca 260  Q
    ||||||||||   |||||| || ||| ||||||||| ||||| || ||||||||||| || || ||||||| |||||||||||||||||||| |||| ||    
T  7790532 aaagtagtgatcaggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatca 7790433  T
Q  261 ttatca 266  Q
    ||||||    
T  7790432 ttatca 7790427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 7771879 - 7771742
Alignment:
Q  129 atatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgt 228  Q
    ||||||||| |||||||| ||||| | ||   ||||||||||   |||||| || ||| ||||||||| ||||| || ||||| ||||| || || ||||    
T  7771879 atatcaccattttttgtagaatatataggttgaaagtagtgatcaggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgt 7771780  T
Q  229 attttttcatcacccatatttcaactgtaccattatca 266  Q
    ||| |||||||||||||||| ||| |||| ||||||||    
T  7771779 attctttcatcacccatattacaattgtatcattatca 7771742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 49038499 - 49038579
Alignment:
Q  173 gggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaac 253  Q
    ||||||| ||| || ||| ||||| |||||||| ||||||||||| || || ||||||| |||||||||||||||||||||    
T  49038499 gggaatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 45384524 - 45384595
Alignment:
Q  184 caaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactg 255  Q
    |||||| ||||||  ||||||||||||||||||| || || || |||| |||||||||||||||||||||||    
T  45384524 caaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactg 45384595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 48899181 - 48899090
Alignment:
Q  172 tgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 263  Q
    |||||||| || ||| || |||||| ||||||  ||||||||| |||| ||| || |||| ||||||||||||||||||||||||| |||||    
T  48899181 tgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctttcatcacccatatttcaactgtatcatta 48899090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 263
Target Start/End: Original strand, 7773402 - 7773536
Alignment:
Q  129 atatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgt 228  Q
    ||||||||| |||||||| ||||| | ||   ||||||||||   |||||| |  ||| ||||||||| ||||  ||  |||||||||| || || ||||    
T  7773402 atatcaccattttttgtagaatatataggttgaaagtagtgatcaggaatggcttcaacagaaagaacaagagatttaatccaagacgaatgcactttgt 7773501  T
Q  229 attttttcatcacccatatttcaactgtaccatta 263  Q
    ||| ||||||||||||||||||||||||| |||||    
T  7773502 attctttcatcacccatatttcaactgtatcatta 7773536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 7878807 - 7878730
Alignment:
Q  189 gaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 266  Q
    |||||||| ||||| ||  ||||||| || || || ||||||| ||||||||||||||||||||||||| ||||||||    
T  7878807 gaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatca 7878730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 48870997 - 48870916
Alignment:
Q  176 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 257  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48870997 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48870916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 48876301 - 48876220
Alignment:
Q  176 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 257  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48876301 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48876220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 48886683 - 48886602
Alignment:
Q  176 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 257  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48886683 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48886602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 48147359 - 48147415
Alignment:
Q  198 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaact 254  Q
    |||||||| ||||||||||| || || ||||||| ||||||||||||||||||||||    
T  48147359 agagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 45371713 - 45371779
Alignment:
Q  191 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 257  Q
    |||||| | |||||| ||||||||||| || || ||||||| |||||| ||||||||||||||||||    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgta 45371779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 48864457 - 48864395
Alignment:
Q  191 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaac 253  Q
    |||||| ||| |||| ||||||||||| || || ||||||| |||||||||||||||||||||    
T  48864457 aagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 7908754 - 7908649
Alignment:
Q  161 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacca 260  Q
    ||||||||||   |||||| || ||| ||||||||| ||||| ||  ||||||| || || || ||||||| |||||||||||||||||||| |||| |     
T  7908754 aaagtagtgatcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaagtgtatct 7908655  T
Q  261 ttatca 266  Q
    ||||||    
T  7908654 ttatca 7908649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 47208283 - 47208238
Alignment:
Q  207 gtccaagacgattgtacattgtattttttcatcacccatatttcaa 252  Q
    |||||||| |||||||| ||||||| ||||||||||| ||||||||    
T  47208283 gtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 7766064 - 7765992
Alignment:
Q  191 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 263  Q
    |||||| || ||||| ||||| ||||| |  || ||||||| |||||||||||||||||||| |||| |||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcatta 7765992  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 7786886 - 7786814
Alignment:
Q  191 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 263  Q
    |||||| ||||||||  |||||||  | || || ||||||| |||||||||||||||||||| |||| |||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcatta 7786814  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 7813902 - 7813838
Alignment:
Q  188 agaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 252  Q
    ||||||||| ||||| ||  |||||||||| || || ||||||| ||||| ||||||||||||||    
T  7813902 agaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 254
Target Start/End: Complemental strand, 21016314 - 21016180
Alignment:
Q  120 gttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgatt 219  Q
    |||||||  ||||||||||||||||||||| || | ||| | || ||  || ||||||||||| ||| ||| | |   |||||||| ||||||||||| |    
T  21016314 gttccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaat 21016215  T
Q  220 gtacattgtattttttcatcacccatatttcaact 254  Q
    |||| ||||||| |||||| |||||||||||||||    
T  21016214 gtactttgtattctttcataacccatatttcaact 21016180  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 264
Target Start/End: Original strand, 47451412 - 47451612
Alignment:
Q  67 gatgctctagcagctgtcctttatcattatacttggccaatac---attatcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaa 163  Q
    ||||||||| || ||||||||| |||||||||||  ||||| |   || ||| || |||||||  |||||||||||||||||| |   |   ||  ||||    
T  47451412 gatgctctaacaactgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgtagaggttaaggggtaaaa 47451511  T
Q  164 gtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 263  Q
    ||| |||  ||||||| || ||| || |||||| |||||||||  ||||||||| |  || ||||||| |||||||||||||||||||||| || |||||    
T  47451512 gtactgagagggaatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcatta 47451611  T
Q  264 t 264  Q
    |    
T  47451612 t 47451612  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 11024149 - 11024203
Alignment:
Q  198 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 252  Q
    |||||||| ||||||||||| || || ||||||| |||||| |||||||||||||    
T  11024149 agagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 11015148 - 11015200
Alignment:
Q  209 ccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccat 261  Q
    ||||||||| || || ||||||| |||||| ||||||||||||||||| ||||    
T  11015148 ccaagacgaatgcactttgtattctttcataacccatatttcaactgttccat 11015200  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 12195739 - 12195671
Alignment:
Q  198 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 266  Q
    |||||||| |||||||| ||||||   ||||||| ||||||| |||||||||||||||| | |||||||    
T  12195739 agagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatca 12195671  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 12440167 - 12440099
Alignment:
Q  198 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 266  Q
    |||||||| |||||||| ||||||   ||||||| ||||||| |||||||||||||||| | |||||||    
T  12440167 agagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatca 12440099  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 15349305 - 15349244
Alignment:
Q  191 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 252  Q
    |||||| ||| ||||||||||||| || |  || ||||||| ||||||||||||||||||||    
T  15349305 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 30124825 - 30124862
Alignment:
Q  63 gagtgatgctctagcagctgtcctttatcattatactt 100  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  30124825 gagtgatgctctagcagctgtcctttgtcattaaactt 30124862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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