View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10478_low_1 (Length: 944)
Name: NF10478_low_1
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 39 - 932
Target Start/End: Complemental strand, 36374267 - 36373392
Alignment:
| Q |
39 |
tgtgtcagctaaaacttcatcagcatctgcaccctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaaa |
138 |
Q |
| |
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||||||||||||||| |||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36374267 |
tgtgtcagctaaaacctcatcaccatttgcaccctgctatggtatataataattgaacataatcagcctttagccttaaaatagacggtaaaaccaaaaa |
36374168 |
T |
|
| Q |
139 |
acaacgtatttaaatcatatatattgtgagtgtaaaacttctttacaccacctatatattataattgtcatatcattaaacatatttgacttcaaccata |
238 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||||||||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||||||| |
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| T |
36374167 |
acaaagtatttatatcatatatat-gtgagtgtaaaacttctgtacactgcctataaatcataactgtcatatcattaaacatatttgacttcaaccata |
36374069 |
T |
|
| Q |
239 |
aatggttcaacagtcaatcaaacta-----tgattttgttgacagtgtaaaacattttatacagataggatatcaaaactaaactaaaaaacatatgata |
333 |
Q |
| |
|
||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36374068 |
aatggttcaactgtcaatcatatgactgactgattttgttgacagtgtaaaacattttatacagataggatatcaaaactaaactaaaaaacatatgata |
36373969 |
T |
|
| Q |
334 |
tcacataacaaaagacaagagacggggaaagcaaatttcacagtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttct |
433 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373968 |
tcacat--------------------gaaagcaaatttca--gtcacacacctcatttccatcaagaagataacttgatgtcaaagctgtttccatttct |
36373891 |
T |
|
| Q |
434 |
tcccatatgttagccaaatcatcaggattttctacctcatcaccgctttccaatacgttttctttctcctgctcaaactgtctttcttcactgatagttg |
533 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373890 |
tcccacatgtcggccaaatcatcaggattttctacctcatcacctttttccgatacgttttctttctcctgctcaaactgtctttcttcactgatagttg |
36373791 |
T |
|
| Q |
534 |
gatcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcctg |
633 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
36373790 |
gatcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattacttcctcacaggcatcagcatttaacattctaccgcctttatgatcctg |
36373691 |
T |
|
| Q |
634 |
ttcttcatgatcatcgatactgtttgtcgttttcctttgaacaccttctttggattgtatagcttcccataaagttattaaacgcatatgctccttacac |
733 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||| |
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|
| T |
36373690 |
ttcttcatgatcatcgatactgtttgtcgttttcttttgaacaccttctttggattgtatcgcttcccataaagttatcaaatccataagctccttacac |
36373591 |
T |
|
| Q |
734 |
aaccgccttctcttaagcttctttgtgcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcacatgataatggagactcattgt |
833 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36373590 |
aaccgccttctcttaaacttctttgtgcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcacatgataatggagactcattgt |
36373491 |
T |
|
| Q |
834 |
atggctcatgatttaacacatcaacagcgttctttcctttagcatcagtcaactgattttccttattaacctttggaccactcttaccatcatcacagg |
932 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373490 |
atggctcatgatttaacacatcaacagcgttctttcctttagcatcagtcaactgattttccttattaacctttggaccactcttaccatcatcacagg |
36373392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 6e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 12069858 - 12070085
Alignment:
| Q |
19 |
atttcgttggattccttctctgtgtcagctaaaacttcatcagcatctgcaccctgctatggtatttaatagttgaacataatcagcctttagccttaaa |
118 |
Q |
| |
|
||||| ||| |||| |||| ||||||||||||| | |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
12069858 |
atttccttgaattctttctttgtgtcagctaaatcctcatcagcatttgcaccctgctatggtaattaatatttgaacataatcagcctttagccttaaa |
12069957 |
T |
|
| Q |
119 |
atagacgataaaaccaaaaaacaacgtatttaaatcatatatattgtgagtgtaaaacttctttacaccacctatatattataattgtcatatcattaaa |
218 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| ||||||||||||||| |||||| | | |||| |||| || |||||||||| ||| ||||| |
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|
| T |
12069958 |
atagaagataaaaccaaaaaacaaagtatttaattcatatatattgtga--ctaaaacatttgcacactgtctatcaatcataattgtcacatccttaaa |
12070055 |
T |
|
| Q |
219 |
catatttgacttcaaccataaatggttcaa |
248 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
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|
| T |
12070056 |
catatttgacttgaaccataaatggttcaa |
12070085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 3e-26; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 376 - 497
Target Start/End: Original strand, 32251531 - 32251652
Alignment:
| Q |
376 |
gtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttcttcccatatgttagccaaatcatcaggattttctacctcatca |
475 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||| | |||||||||||| | | | |||||||||||| ||||||| |||||||| |
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|
| T |
32251531 |
gtcacacaccgcagttccatcaagaagataacttgatgtcaaagctgtattcatttcttcccacaaggcatccaaatcatcagcattttcttcctcatca |
32251630 |
T |
|
| Q |
476 |
ccgctttccaatacgttttctt |
497 |
Q |
| |
|
|||||| | |||| ||||||| |
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| T |
32251631 |
tcgcttttcgatactttttctt |
32251652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 536 - 643
Target Start/End: Original strand, 32251706 - 32251813
Alignment:
| Q |
536 |
tcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcctgtt |
635 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | ||||||| ||| |||| ||||| | |||||||||||| || ||||||||| |||||||||| |||| |
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|
| T |
32251706 |
tcttcttcagttggtagactatcgaaattcttcatgtaactatctattatttccttgcgggcatcagcattgaatgttctaccgcctttatgatcttgtt |
32251805 |
T |
|
| Q |
636 |
cttcatga |
643 |
Q |
| |
|
|||||||| |
|
|
| T |
32251806 |
cttcatga |
32251813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 32229039 - 32229101
Alignment:
| Q |
376 |
gtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttcttccca |
438 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||||| |||||| |
|
|
| T |
32229039 |
gtcacacacctcagttccatcaagaagataacttgatgtcgaagttgtatccatttattccca |
32229101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 32228772 - 32228841
Alignment:
| Q |
69 |
accctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaaa |
138 |
Q |
| |
|
||||||||||||||| |||||||||||| || |||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
32228772 |
accctgctatggtatataatagttgaactaaagcagcctttagccatgaaatagaagataaaaccaaaaa |
32228841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 38208149 - 38208079
Alignment:
| Q |
69 |
accctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaaaa |
139 |
Q |
| |
|
|||||||||| |||| |||||||||||| ||||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
38208149 |
accctgctattgtatataatagttgaactgaatcaagatttagccttagaatagaatataaaaccaaaaaa |
38208079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 376 - 482
Target Start/End: Original strand, 8845911 - 8846017
Alignment:
| Q |
376 |
gtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttcttcccatatgttagccaaatcatcaggattttctacctcatca |
475 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||| || || ||| || |||||||||||||| ||| || ||| ||||||||||||||| || ||||| |
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|
| T |
8845911 |
gtcacaaacctcagttccatcaagaagacaacttgctgccatagcagtatccatttcttcccaaatggcagacaagtcatcaggattttcttccccatca |
8846010 |
T |
|
| Q |
476 |
ccgcttt |
482 |
Q |
| |
|
|||||| |
|
|
| T |
8846011 |
tcgcttt |
8846017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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