View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_low_10 (Length: 366)
Name: NF10478_low_10
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 38841677 - 38841334
Alignment:
| Q |
17 |
agctaggaaagtaggcaaccataatatattatacacatatagtatcatgtacgaggatggtgcagcatcaggacaatttttaaaataagagttaaaaatg |
116 |
Q |
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| T |
38841677 |
agctaggaaagtaggcaaccataatatattatacacatatagtatcatgtacgaggatggtgcagcatcaggacaatttttaaaacaagagttaaaaatg |
38841578 |
T |
|
| Q |
117 |
tagtgcattcatatagcaactaatctaatttaagtaataaacaactagggtctaagtaccaaattatagcaatagttaaattcaaacttttaataaagca |
216 |
Q |
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| T |
38841577 |
tagtgcattcatatagcaactaatctaatttaagtaataaacaactagggtctaagtaccaaattatagcaatagttaaattcaaacttttaataaagca |
38841478 |
T |
|
| Q |
217 |
agataccatatcctacaatatcatataacttccctatatataatcctcaactaagataatataaaaacaactcaagctctaataaactaactcatcaatt |
316 |
Q |
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| T |
38841477 |
agataccatatcctacaatatcatataacttccctatatataatcctcaactaagataacataaaaacaactcaagctctaataaactaactcatcaatt |
38841378 |
T |
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| Q |
317 |
acttccttaagaaaaaacatgtatgcttctatttcctttgctac |
360 |
Q |
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| T |
38841377 |
acttcctcaagaaaaaacatgtatgcttctatttcctttactac |
38841334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 38859381 - 38859288
Alignment:
| Q |
34 |
accataatatattatacacatatagtatcatgtacgaggatggtgcagcatcaggacaatttttaaaataagagttaaaaatgtagtgcattcat |
128 |
Q |
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| T |
38859381 |
accataatatattagacacatatagtgtcatgtacgaggatgatgcag-atcagcacaatttttaagatgagagttaaacgtgtagtgcattcat |
38859288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 38862167 - 38861999
Alignment:
| Q |
147 |
taagtaataaacaactagggtctaagtaccaaattatagcaatagttaaattcaaacttttaataaagcaagataccatatcctacaatatcatat---- |
242 |
Q |
| |
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||||||| || ||||||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||| || ||||| |
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| T |
38862167 |
taagtaacaagcaactagggtctaagcaccaaattataataatagttaaactcaaactttagtaaaagcaagatactatatcctac--taccatattttt |
38862070 |
T |
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| Q |
243 |
-aacttccctatatataatcctcaactaagat--aatataaaaacaactcaagctctaataaactaactcat |
311 |
Q |
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| T |
38862069 |
aaacttccctatatatacccct-aactaagatacaacataacagcaactcaagctctaattaactaactcat |
38861999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 308
Target Start/End: Complemental strand, 38865563 - 38865438
Alignment:
| Q |
189 |
tagttaaattcaaacttttaataaa-gcaagataccatatcctacaatatcata------taacttccctatatataatcctcaactaagataatataaa |
281 |
Q |
| |
|
||||||| || ||||||| |||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||| ||| |
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| T |
38865563 |
tagttaatttgaaactttaaataaaagcaagataccatatcctaccata-catacgagtataacttccctatatataatcctcatctaagataacatacc |
38865465 |
T |
|
| Q |
282 |
aacaactcaagctctaataaactaact |
308 |
Q |
| |
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|||||||||| ||||||| || ||||| |
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| T |
38865464 |
aacaactcaatctctaattaaataact |
38865438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 38850410 - 38850465
Alignment:
| Q |
176 |
caaattatagcaatagttaaattcaaacttttaataaagcaagataccatatccta |
231 |
Q |
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||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
38850410 |
caaattataataatagttaaattcaaactttaataaaagcaagataccatatccta |
38850465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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