View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_low_11 (Length: 363)
Name: NF10478_low_11
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 14121473 - 14121127
Alignment:
| Q |
1 |
agcttgattagggtgctgatagcgacccataagggagacagcgacccaaataccaccaggagcaaagatctcataacgatacaattgaatctgacctcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14121473 |
agcttgattagggtgctgatagcgacccataagggagacagcgacccaaataccaccaggagcaaagatctcataacgatacaattgaatctgacttcct |
14121374 |
T |
|
| Q |
101 |
atcgggaggacatcagttgaaggatttgggcgccatgcattattaacagtggtgctaataaagacatgagctacaggcctgttggggtcaagaggcgccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14121373 |
atcgggaggacatcagttgaaggatttgggcgccatgcattattaacagtggtgctaataaagacatgagctacaggcctgttggggtcaagaggcgccc |
14121274 |
T |
|
| Q |
201 |
cagcattatggacaaagtcgtcaagattatagtaagtgttgttgggagtgtttccttgagctggtgcttggaacccgtttgctaagatctcctggtaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14121273 |
cagcattatggacaaagtcgtcaagattatagtaagtgttgttgggagtgtttccttgagctggtgcttggaacccgtttgctaagatctcctggtaagg |
14121174 |
T |
|
| Q |
301 |
cctcgtggtccatcgatacactggacgccggatatcaaattcaaagt |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14121173 |
cctcgtggtccatcgatacactggacgccggatatcaaattcaaagt |
14121127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 14114046 - 14113700
Alignment:
| Q |
1 |
agcttgattagggtgctgatagcgacccataagggagacagcgacccaaataccaccaggagcaaagatctcataacgatacaattgaatctgacctcct |
100 |
Q |
| |
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|||| ||||||||| ||| ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14114046 |
agctagattagggttctggtagcgacccttaagggtgacagcggaccaaataccaccaggagcaaagatctcataacgatacaattgaatctgacttcct |
14113947 |
T |
|
| Q |
101 |
atcgggaggacatcagttgaaggatttgggcgccatgcattattaacagtggtgctaataaagacatgagctacaggcctgttggggtcaagaggcgccc |
200 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||| ||| |
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| T |
14113946 |
atcgggaggacatcagttgaaggatttggacgccatgcattattaatagtggtgctaataaaggcacgaggtacagctctgttggggtcaacaggcaccc |
14113847 |
T |
|
| Q |
201 |
cagcattatggacaaagtcgtcaagattatagtaagtgttgttgggagtgtttccttgagctggtgcttggaacccgtttgctaagatctcctggtaagg |
300 |
Q |
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|| || ||||||||||| ||||||||| || |||| |||||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
14113846 |
caacactatggacaaagccgtcaagatcatggtaaatgttgttgtcagcgtttccttgatctggtgcttggaacccgtttgtgaagatctcctggtaagg |
14113747 |
T |
|
| Q |
301 |
cctcgtggtccatcgatacactggacgccggatatcaaattcaaagt |
347 |
Q |
| |
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| || || |||||||||||| |||||| ||||||||||| ||||||| |
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|
| T |
14113746 |
cttcctgctccatcgatacattggacggcggatatcaaactcaaagt |
14113700 |
T |
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