View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_low_13 (Length: 347)
Name: NF10478_low_13
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 29254471 - 29254812
Alignment:
| Q |
1 |
gaagctggttggcaggcatgttaactacgattcgatttgannnnnnngttgttaatttaattctatatattatgagtataaagtttatatttcagtaacc |
100 |
Q |
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| T |
29254471 |
gaagctggttggcaggcatgttaactacgattcgatttgatttttttgttgttaatttaattctatatattatgagtataaagtttatatttcagtaacc |
29254570 |
T |
|
| Q |
101 |
atgttatcgagttcaagtggttattgattttaagttatggatgaatcgatcatgagtatgagtacattgcattcacttaatttatatccaagacgaatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29254571 |
atgttatcgagttcaagtggttattgattttaagttatggatgaatcgatcatgagtatgagtacattgcattcacttaatttatatccaagacgaatcg |
29254670 |
T |
|
| Q |
201 |
aat-----------tataagtacaaagttttagccaataaagctaaaatcaggtaatttatatgcaggtgaaccggggcctctacggggacaatctcccc |
289 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29254671 |
aatcaataactatatataagtacaaagttttagccaataaagctaaaatcaggtaatttatatgcaggtgaaccggggcctctacggggacaatctcccc |
29254770 |
T |
|
| Q |
290 |
agattgttcatctattggacggtaagtaatttatattaattt |
331 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29254771 |
agattgttcatctattggacagtaagtaatttatattaattt |
29254812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 29227219 - 29227276
Alignment:
| Q |
269 |
ctctacggggacaatctccccagattgttcatctattggacggtaagtaatttatatt |
326 |
Q |
| |
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|||||||| ||||||| ||| |||||||| ||||||||||| ||||||| |||||||| |
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| T |
29227219 |
ctctacggagacaatcgccctagattgtttatctattggaccgtaagtattttatatt |
29227276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 29246447 - 29246556
Alignment:
| Q |
217 |
ttttagccaataaagctaaaatcaggtaatttatatgcaggtgaaccggggcctctacggggacaatctccccagattgttcatctattggacggtaagt |
316 |
Q |
| |
|
|||||| || |||| |||| |||| ||||||| ||| ||||||| ||| | |||||||||||||| ||| |||||||| | || |||||| |||||| |
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| T |
29246447 |
ttttaggcagtaaaactaagatcaagtaatttttatccaggtgagtgcgggtcgctacggggacaatcgccctagattgtttaccttttggactgtaagt |
29246546 |
T |
|
| Q |
317 |
aatttatatt |
326 |
Q |
| |
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|||||||||| |
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| T |
29246547 |
aatttatatt |
29246556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 30917705 - 30917599
Alignment:
| Q |
217 |
ttttagccaataaagctaaaatcaggtaatttatatgcaggtgaaccggggcctctacggggacaatctccccagattgttcatctattggacggtaagt |
316 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| ||||||||||| || |||||||||| ||||||| |||| ||| ||||||||||||||||| |
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| T |
30917705 |
ttttagccaataaagctaagatcaagtaatttttatgcaggtgagccaccagatctacggggattatctccctagatcgtttgtctattggacggtaagt |
30917606 |
T |
|
| Q |
317 |
aatttat |
323 |
Q |
| |
|
||||||| |
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|
| T |
30917605 |
aatttat |
30917599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 30927828 - 30927774
Alignment:
| Q |
270 |
tctacggggacaatctccccagattgttcatctattggacggtaagtaatttata |
324 |
Q |
| |
|
||||||| ||| ||||||| ||| | ||| ||||||||||||||||||||||||| |
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|
| T |
30927828 |
tctacggagactatctccctagaatattcgtctattggacggtaagtaatttata |
30927774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 30908547 - 30908494
Alignment:
| Q |
270 |
tctacggggacaatctccccagattgttcatctattggacggtaagtaatttat |
323 |
Q |
| |
|
||||||||||| ||||||| ||||| || | |||||||||||||||||||||| |
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|
| T |
30908547 |
tctacggggactatctccctagattctttgtttattggacggtaagtaatttat |
30908494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 40029851 - 40029904
Alignment:
| Q |
273 |
acggggacaatctccccagattgttcatctattggacggtaagtaatttatatt |
326 |
Q |
| |
|
|||||||||||||||| |||||||| |||| | |||||||||||| ||||||| |
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|
| T |
40029851 |
acggggacaatctccctagattgtttatctttatgacggtaagtaaattatatt |
40029904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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