View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_low_16 (Length: 319)
Name: NF10478_low_16
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 4817358 - 4817669
Alignment:
| Q |
1 |
attatacatctcacattctaattttcattgcctaagattgcaatttcaaactaggagaggaaaaaacgggtcaaaacaaaaatttcgaccatccacaaat |
100 |
Q |
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| T |
4817358 |
attatacatctcacattctaattttcattgcctaagattgcaatttcaaactaggagaggaaaaaacgggtcaaaacaaaaatttcgaccatccacaaat |
4817457 |
T |
|
| Q |
101 |
aatgggagacattagaacctcaaagaacaaacagaaaaaataaacagaaactagtttgatccattatttattttagtataaaatgcaagcccttcttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4817458 |
aatgggagacattagaacctcaaagaacaaacagaaaaaataaacagaaactagtttgatccattatttattttagtataaaatgcaagtccttcttcat |
4817557 |
T |
|
| Q |
201 |
tgcaaacacaccatcacctttaattaaagtaaattaattttcatatattcataccaacaatatcaagaacaatggcaaagtctacaatcccccttgtctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4817558 |
tgcaaacacaccatcacctttaattaaagtaaattaattttcatatactcataccaacaatatcaagaacaatggcaaagtctacaatcccccttgtctt |
4817657 |
T |
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| Q |
301 |
caccctttgctt |
312 |
Q |
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|||||||||||| |
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| T |
4817658 |
caccctttgctt |
4817669 |
T |
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