View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_low_18 (Length: 279)
Name: NF10478_low_18
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 29 - 271
Target Start/End: Original strand, 48960194 - 48960440
Alignment:
| Q |
29 |
acaatagaagttataaacacct-----taggttcaaaaacaaaattaaacttaaattgctccaatgagataccaatcttactttgtgagcttgtgtcagc |
123 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48960194 |
acaatagaagttataaacaccttaccttaggttcaaaaacaaaattaaacttaaattactccaatgagataccaatcttactttgtgagcttgtgtcagc |
48960293 |
T |
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| Q |
124 |
tggaagtgccaattgaatccgatgcttttccccatttctttaattttatacgggtcatgtctcgaattcatggtctattata-tatattcacnnnnnnnn |
222 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48960294 |
tggaagtgccaattgaatccgatgc-tttccccatttctttaattttatacgggtcatgtctcgaattcatggtctattatattatattcac-ttttttt |
48960391 |
T |
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| Q |
223 |
cttttcctacctgcgacaacttgtgttttaaactcatcattgttcttct |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48960392 |
cttttcctacctgcgacaacttgtgttttaaactcatcattgttcttct |
48960440 |
T |
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