View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_low_19 (Length: 274)
Name: NF10478_low_19
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 34 - 267
Target Start/End: Complemental strand, 34057928 - 34057695
Alignment:
| Q |
34 |
atgaaactatgttatatagcatcaacacatgtaaactaaattctaattaatatacttgcatttaataattgttctgaacttgatcaaagcccatcttaat |
133 |
Q |
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| T |
34057928 |
atgaaactatgttatataccatcaacacatgtaaactaaattctaattaatatacttgcatttaataattgttctgaacttgatcaaagcccatattaat |
34057829 |
T |
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| Q |
134 |
tagacctctgctctagaagtaccaacatccatgtgatttcttccagcaacaggacaattacatcaaatgcaaaaaagactataatgtaagttgatttccg |
233 |
Q |
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| T |
34057828 |
tagacctctgctctagaagtaccaacatccatgtgatttcttccagcaacaggacaattacatcaaatgcaaaaaagactataatgtaagttgatttcca |
34057729 |
T |
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| Q |
234 |
tttttcttcatgattcaacatagtaaatcctatg |
267 |
Q |
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| T |
34057728 |
tttttcttcatgattcaacatagtaaatcctatg |
34057695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34057974 - 34057930
Alignment:
| Q |
1 |
taatgtatccagtgaatttttattttagtgtgtatgaaactatgt |
45 |
Q |
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| T |
34057974 |
taatgtacccactgaatttttattttagtgtgtatgaaactatgt |
34057930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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