View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_low_27 (Length: 240)
Name: NF10478_low_27
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14812640 - 14812862
Alignment:
| Q |
1 |
gacgcttttgtgtttttgaatccgtcgaaggtagagaaaacgagttccagcgccggcgagacgaagaatgatgttgtaaagaaagtgaaaatggtgaaag |
100 |
Q |
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| T |
14812640 |
gacgctttcgtgtttttgaatccgtcgaaggtagagaaaacgagttccagcgccggcgagacgaagaatgatgttgtaaagaaagtgaaaatggtgaaag |
14812739 |
T |
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| Q |
101 |
ggaaaaaggcggccccagcgccgtcggcacatgagaagcattatgtgatgagtaaagctaggaaggagaatgataaacggaaatcttatttgccgtatag |
200 |
Q |
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| T |
14812740 |
ggaaaaaggcggccccagcgccgtcggcacatgagaagcattatgtgatgagtaaagcgaggaaggagaatgataaacggaaatcttatttgccgtatag |
14812839 |
T |
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| Q |
201 |
gcaagagttgtttgggttttttg |
223 |
Q |
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|||||||||||||||||| |||| |
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| T |
14812840 |
gcaagagttgtttgggttctttg |
14812862 |
T |
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