View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_low_3 (Length: 566)
Name: NF10478_low_3
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 561
Target Start/End: Complemental strand, 8801144 - 8800598
Alignment:
| Q |
15 |
aaaatccaccttttatattaagctcattatttaacatgctaaaacttacaaattgtaaactatttagggagcttttgaaaagtttcagnnnnnnnngttg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8801144 |
aaaatccaccttttatattaagctcattatttaacatgctaaaacttacaaattgtaaactatttagggagcttttgaaaagtttcagaaaaaaaagttg |
8801045 |
T |
|
| Q |
115 |
acaatttgcttaatgatcttatccatttataggcactaccaaactttgattaaacctcttttgagaaactgcatagtacgcctaagccaaacgtggaaag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
8801044 |
acaatttgcttaatgatcttatccatttataggcactaccaaattttgattaaacctcttttgagaaactgcacagtacgcctaagccaaacgtggaa-g |
8800946 |
T |
|
| Q |
215 |
tgattgtttaaaaagggcttagatcgtctgnnnnnnnnnnnnnntgttaagctggaacaagaactttccacaacatcactctaatgtggcnnnnnnnnnn |
314 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8800945 |
tgattgtttaaaaagggtttagatcgtctgaaaaagcaaaaaaatgttaagctggaacaagaactttccacaacatcactctaatgtggcaaaaaaataa |
8800846 |
T |
|
| Q |
315 |
nnnnnnntagcgatataacatgatcaatgttcttgcagcttgaatatagtagtttttgttttgaatatgtaagtgcatgtactgtccattattattatta |
414 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8800845 |
ataaa--tagcgatatatgatgatcaatgttcttacagcttgaatataatagtttttgttttgaatatgtaagtgcatgtgctgtccattattattatta |
8800748 |
T |
|
| Q |
415 |
ttttgaagaaaagtgcatgtccattaattattaggccatactattgatccatattatatttttgta---nnnnnnnnnnataaatagatctcatttataa |
511 |
Q |
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|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8800747 |
ttttgaagaaaagtgcatgtccattagttataaggtcatactattgatccatattatatttttgtatttttttttttttataaatagatctcatttataa |
8800648 |
T |
|
| Q |
512 |
tataatcatacacaattgaagactatgatacaatactctttcttctctct |
561 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8800647 |
cataatcatacataattgaagactatgatacaatactctttcttctctct |
8800598 |
T |
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