View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_low_36 (Length: 212)
Name: NF10478_low_36
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 37162462 - 37162642
Alignment:
| Q |
14 |
agatgaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgta |
113 |
Q |
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| T |
37162462 |
agatgaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgta |
37162561 |
T |
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| Q |
114 |
aaagattgccttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatatt |
194 |
Q |
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| T |
37162562 |
aaagattgccttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatatt |
37162642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 37154723 - 37154886
Alignment:
| Q |
19 |
aagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaaga |
118 |
Q |
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| T |
37154723 |
aagtcgatggtacctgaaatagtacagtcacggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaaga |
37154822 |
T |
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| Q |
119 |
ttgccttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctc |
182 |
Q |
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| T |
37154823 |
tagtcttatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctc |
37154886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 37150654 - 37150488
Alignment:
| Q |
19 |
aagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaaga |
118 |
Q |
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| T |
37150654 |
aagtcgatggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgtagaaga |
37150555 |
T |
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| Q |
119 |
ttgccttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaa |
185 |
Q |
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| T |
37150554 |
tagccttatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgagttctcgaa |
37150488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 37159479 - 37159313
Alignment:
| Q |
19 |
aagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaaga |
118 |
Q |
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| T |
37159479 |
aagtcgatggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgtagaaga |
37159380 |
T |
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| Q |
119 |
ttgccttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaa |
185 |
Q |
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| T |
37159379 |
tagccttatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgagttctcgaa |
37159313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 91815 - 91978
Alignment:
| Q |
19 |
aagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaaga |
118 |
Q |
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| T |
91815 |
aagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaaga |
91914 |
T |
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| Q |
119 |
ttgccttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctc |
182 |
Q |
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| T |
91915 |
tagccttatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctc |
91978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 95122 - 95285
Alignment:
| Q |
19 |
aagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaaga |
118 |
Q |
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| T |
95122 |
aagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaaga |
95221 |
T |
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| Q |
119 |
ttgccttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctc |
182 |
Q |
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| T |
95222 |
tagccttatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctc |
95285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 46315844 - 46315741
Alignment:
| Q |
18 |
gaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaag |
117 |
Q |
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| T |
46315844 |
gaagtcaatggtacctgagataatacaatcacggtagaattgacgcatggtgtgagcgtaaagtgtgtcttggtaaccatccattctgcatttgtaaaaa |
46315745 |
T |
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| Q |
118 |
attg |
121 |
Q |
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|||| |
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| T |
46315744 |
attg |
46315741 |
T |
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