View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10478_low_6 (Length: 430)
Name: NF10478_low_6
Description: NF10478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10478_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 39 - 339
Target Start/End: Complemental strand, 36374267 - 36373963
Alignment:
| Q |
39 |
tgtgtcagctaaaacttcatcagcatctgcaccctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaaa |
138 |
Q |
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||||||||||||||| |||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36374267 |
tgtgtcagctaaaacctcatcaccatttgcaccctgctatggtatataataattgaacataatcagcctttagccttaaaatagacggtaaaaccaaaaa |
36374168 |
T |
|
| Q |
139 |
acaacgtatttaaatcatatatattgtgagtgtaaaacttctttacaccacctatatattataattgtcatatcattaaacatatttgacttcaaccata |
238 |
Q |
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|||| ||||||| |||||||||| |||||||||||||||||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||||||| |
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| T |
36374167 |
acaaagtatttatatcatatata-tgtgagtgtaaaacttctgtacactgcctataaatcataactgtcatatcattaaacatatttgacttcaaccata |
36374069 |
T |
|
| Q |
239 |
aatggttcaacagtcaatcaaacta-----tgattttgttgacagtgtaaaacattttatacagataggatatcaaaactaaactaaaaaacatatgata |
333 |
Q |
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||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36374068 |
aatggttcaactgtcaatcatatgactgactgattttgttgacagtgtaaaacattttatacagataggatatcaaaactaaactaaaaaacatatgata |
36373969 |
T |
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| Q |
334 |
tcacat |
339 |
Q |
| |
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|||||| |
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| T |
36373968 |
tcacat |
36373963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 36373962 - 36373909
Alignment:
| Q |
360 |
gaaagcaaatttcacagtcacacacctcacttccatcaagaagataacttgatgtc |
415 |
Q |
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| T |
36373962 |
gaaagcaaatttca--gtcacacacctcatttccatcaagaagataacttgatgtc |
36373909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 12069858 - 12070085
Alignment:
| Q |
19 |
atttcgttggattccttctctgtgtcagctaaaacttcatcagcatctgcaccctgctatggtatttaatagttgaacataatcagcctttagccttaaa |
118 |
Q |
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||||| ||| |||| |||| ||||||||||||| | |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
12069858 |
atttccttgaattctttctttgtgtcagctaaatcctcatcagcatttgcaccctgctatggtaattaatatttgaacataatcagcctttagccttaaa |
12069957 |
T |
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| Q |
119 |
atagacgataaaaccaaaaaacaacgtatttaaatcatatatattgtgagtgtaaaacttctttacaccacctatatattataattgtcatatcattaaa |
218 |
Q |
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||||| |||||||||||||||||| |||||||| ||||||||||||||| |||||| | | |||| |||| || |||||||||| ||| ||||| |
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| T |
12069958 |
atagaagataaaaccaaaaaacaaagtatttaattcatatatattgtga--ctaaaacatttgcacactgtctatcaatcataattgtcacatccttaaa |
12070055 |
T |
|
| Q |
219 |
catatttgacttcaaccataaatggttcaa |
248 |
Q |
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| T |
12070056 |
catatttgacttgaaccataaatggttcaa |
12070085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 32228772 - 32228841
Alignment:
| Q |
69 |
accctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaaa |
138 |
Q |
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||||||||||||||| |||||||||||| || |||||||||||| | ||||||| |||||||||||||| |
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| T |
32228772 |
accctgctatggtatataatagttgaactaaagcagcctttagccatgaaatagaagataaaaccaaaaa |
32228841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 415
Target Start/End: Original strand, 32229039 - 32229078
Alignment:
| Q |
376 |
gtcacacacctcacttccatcaagaagataacttgatgtc |
415 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
32229039 |
gtcacacacctcagttccatcaagaagataacttgatgtc |
32229078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 415
Target Start/End: Original strand, 32251531 - 32251570
Alignment:
| Q |
376 |
gtcacacacctcacttccatcaagaagataacttgatgtc |
415 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||| |
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| T |
32251531 |
gtcacacaccgcagttccatcaagaagataacttgatgtc |
32251570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 38208149 - 38208079
Alignment:
| Q |
69 |
accctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaaaa |
139 |
Q |
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|||||||||| |||| |||||||||||| ||||| |||||||||| |||||| |||||||||||||| |
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| T |
38208149 |
accctgctattgtatataatagttgaactgaatcaagatttagccttagaatagaatataaaaccaaaaaa |
38208079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 8845700 - 8845768
Alignment:
| Q |
69 |
accctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaa |
137 |
Q |
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| T |
8845700 |
accctgcaacggtatataatagttgaaatgaatcagcctttaaccttagaaaagaagataaaaccaaaa |
8845768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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