View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10479_high_1 (Length: 541)

Name: NF10479_high_1
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10479_high_1
NF10479_high_1
[»] chr2 (14 HSPs)
chr2 (18-524)||(15517487-15517993)
chr2 (18-404)||(15534000-15534383)
chr2 (33-315)||(15493676-15493958)
chr2 (14-346)||(15654449-15654781)
chr2 (14-327)||(15645397-15645710)
chr2 (43-324)||(15601209-15601490)
chr2 (14-340)||(15624772-15625098)
chr2 (407-523)||(15534691-15534807)
chr2 (414-520)||(15625482-15625588)
chr2 (414-520)||(15494096-15494202)
chr2 (414-520)||(15655029-15655135)
chr2 (414-511)||(15645877-15645974)
chr2 (470-520)||(15605601-15605651)
chr2 (346-402)||(15534437-15534495)


Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Original strand, 15517487 - 15517993
Alignment:
Q  18 atgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagtaacgg 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  15517487 atgaacgcagatgcatctgatattgcaaaccccaaaaatgatggtttcttcaaaaagtttggttttcctgtgttatcgataccacctggtaaagtaactg 15517586  T
Q  118 cagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagtttttcatg 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||    
T  15517587 cagcagcgaacactccggtagcaatgactgttgaaattagcatacacgactccgcagtttttttcatccaagactctgcatcttcccttagtttttcatg 15517686  T
Q  218 ctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgctggcagcattatcttctttacattctatcatatgaaaatg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15517687 ctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgcgggcagcattatcttctttacattctatcatatgaaaatg 15517786  T
Q  318 tatatatgttcgataaaatatagaaatgtaaaaataaattagttaaatttattaagtacagtaggataattgtgtatgcacacaagggatgcactatacc 417  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  15517787 tatatatgttagataaaatatagaaatgtaaaaataaattagttaaatttattaaggacggtaggataattgtgtatgcacacaagggatgcactatacc 15517886  T
Q  418 tcaaaccataataactcaacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtgcaataaattgt 517  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15517887 tcaaaccataataactcgacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtgcaataaactgt 15517986  T
Q  518 ttccttc 524  Q
    |||||||    
T  15517987 ttccttc 15517993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 15534000 - 15534383
Alignment:
Q  18 atgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagtaacgg 117  Q
    ||||| ||||||||||||||| ||||||| ||||| |||| || |||| ||||  ||||||||||||| ||||||||| ||||||||||||||||||| |    
T  15534000 atgaatgcagatgcatctgatgttgcaaataccaagaatggtgttttcgtcaactagtttggttttccggtgtcatcggtaccacctggtaaagtaactg 15534099  T
Q  118 cagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagtttttcatg 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||       |||||||||||||||||| | |||||||||| ||||    
T  15534100 cagcagcgaacactccggtagcaatgactgttgaaattagcatacatgactccgcagtttttttcatccaagactctgcatcctcccttagttttgcatg 15534199  T
Q  218 ctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgctggcagcattatcttctttacattctatcatatgaaaatg 317  Q
    |||||||||||| |  |||| |||||||| || ||  ||||||||| |||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  15534200 ctcatttgagaataactcttgtgcagtcaagcgttcagagtttttcaactttatttgtgctggcaacattatcttctttacattctatcatatgaaaatg 15534299  T
Q  318 tatatatgttcgataaaatatagaaatgtaaaaataaatt--agttaaatttattaagtacagtaggataattgtgtatgcacacaagg 404  Q
    |||||||||| ||||||||||||| | |||||||||||||  ||||||||||||||     ||||||||||||||||||||||||||||    
T  15534300 tatatatgttagataaaatatagataagtaaaaataaattagagttaaatttatta-----agtaggataattgtgtatgcacacaagg 15534383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 33 - 315
Target Start/End: Original strand, 15493676 - 15493958
Alignment:
Q  33 tctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagtaacggcagcagcgaacactc 132  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||    
T  15493676 tctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactc 15493775  T
Q  133 cggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagtttttcatgctcatttgagaacag 232  Q
    | || |||||||||||||||||||||||||| ||||| ||||       |||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  15493776 cagtagcaatgactgttgaaattagcatacaagactcggcagtttttttcatccaagactctgcatcttcccttagtttttcatgctcattcgagaacag 15493875  T
Q  233 ttcttctgcagtcacgcctttggagtttttcgacttaatctgtgctggcagcattatcttctttacattctatcatatgaaaa 315  Q
    |||||||||||||| | ||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||| |||||    
T  15493876 ttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa 15493958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 15654449 - 15654781
Alignment:
Q  14 tgagatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagta 113  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||| | ||||||| |||| ||||||||||||    
T  15654449 tgagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagta 15654548  T
Q  114 acggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagttttt 213  Q
       |||||||| ||||||||||| |||||||| |||||||||||||| || ||||| ||||       |||||| |||||||||| ||  |||||| |||    
T  15654549 gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcattttctcttagtgttt 15654648  T
Q  214 catgctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgctggcagcattatcttctttacattctatcatatgaa 313  Q
    |||||||| ||||||| || |||| |||||| | |||||  |||||| ||  ||| |||||||| |||| ||||||||||||||| |||| ||| |||||    
T  15654649 catgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaa 15654748  T
Q  314 aatgtatatatgttcgataaaatatagaaatgt 346  Q
    |||||||||| |||   ||||||||||| ||||    
T  15654749 aatgtatatacgttaagtaaaatatagatatgt 15654781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 15645397 - 15645710
Alignment:
Q  14 tgagatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagta 113  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||| | ||||||| |||| ||||||||||||    
T  15645397 tgagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagta 15645496  T
Q  114 acggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagttttt 213  Q
       |||||||| ||||||||||| |||||||| |||||||||||||| || ||||| || |       |||||| |||||||||| ||  |||||| |||    
T  15645497 gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggccgtttttttcatccacgactctgcattttctcttagtgttt 15645596  T
Q  214 catgctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgctggcagcattatcttctttacattctatcatatgaa 313  Q
    |||||||| ||||||| || |||| |||||| | |||||  |||||| ||  ||| |||||||| |||| ||||||||||||||| |||| ||| |||||    
T  15645597 catgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaa 15645696  T
Q  314 aatgtatatatgtt 327  Q
    ||||||||||||||    
T  15645697 aatgtatatatgtt 15645710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 43 - 324
Target Start/End: Original strand, 15601209 - 15601490
Alignment:
Q  43 caaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagtaacggcagcagcgaacactccggttgcaat 142  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||   |||||||| ||||||||||| |||||    
T  15601209 caaacaccaaaaatgatggtttcttcaaataatttggttttcctgtgtcatcgataccgcctggtacagtagttgcagcagcaaacactccggtagcaat 15601308  T
Q  143 gactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagtttttcatgctcatttgagaacagttcttctgca 242  Q
    ||| | ||||||||||||||| ||||| || |       |||||| |||||||||| ||  |||||||||| |||||| |||||||| | ||||| ||||    
T  15601309 gacggctgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttagtttttgatgctcttttgagaagacttcttgtgca 15601408  T
Q  243 gtcacgcctttggagtttttcgacttaatctgtgctggcagcattatcttctttacattctatcatatgaaaatgtatatat 324  Q
    || | |||||  |||||| ||   || || |||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  15601409 gtaaggccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcatatgaaaatgtttatat 15601490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 14 - 340
Target Start/End: Original strand, 15624772 - 15625098
Alignment:
Q  14 tgagatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagta 113  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||| |  |||||| |||| ||||||||||||    
T  15624772 tgagatgaatgcaaatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagaatcatcggtaccgcctggtaaagta 15624871  T
Q  114 acggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagttttt 213  Q
       |||||||| ||||||||||| |||||||| |||||||||||||| || ||||| ||||       |||||| |||||||| | ||  |||||| |||    
T  15624872 gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcgttttctcttagtgttt 15624971  T
Q  214 catgctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgctggcagcattatcttctttacattctatcatatgaa 313  Q
    |||||||| ||||||| || |||| ||| || | |||||  |||||| ||  ||| |||||| | |||| ||||||||||||||| |||| ||| |||||    
T  15624972 catgctcaattgagaatagctcttgtgctgtaaagccttcagagtttctcatctttatctgtccaggcaacattatcttctttactttctgtcacatgaa 15625071  T
Q  314 aatgtatatatgttcgataaaatatag 340  Q
    ||||||||||||||   ||||||||||    
T  15625072 aatgtatatatgttaagtaaaatatag 15625098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 407 - 523
Target Start/End: Original strand, 15534691 - 15534807
Alignment:
Q  407 tgcactatacctcaaaccataataactcaacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtg 506  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||||    
T  15534691 tgcattatacctcaaaccataataactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaattttgcagccaagtg 15534790  T
Q  507 caataaattgtttcctt 523  Q
    ||||||| |||||||||    
T  15534791 caataaagtgtttcctt 15534807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 414 - 520
Target Start/End: Original strand, 15625482 - 15625588
Alignment:
Q  414 tacctcaaaccataataactcaacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtgcaataaa 513  Q
    |||||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||    
T  15625482 tacctcaaaccataataactcaaggcacatttgaaaagctgacccagaaaccaattcaagttgaacttgtggtgctaattttgcagccaagtgcaataaa 15625581  T
Q  514 ttgtttc 520  Q
     ||||||    
T  15625582 gtgtttc 15625588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 414 - 520
Target Start/End: Original strand, 15494096 - 15494202
Alignment:
Q  414 tacctcaaaccataataactcaacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtgcaataaa 513  Q
    |||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||| ||||| |||| |    
T  15494096 tacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgacctcgtcgtgctaattttgcagccaagtgtaatata 15494195  T
Q  514 ttgtttc 520  Q
     ||||||    
T  15494196 gtgtttc 15494202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 414 - 520
Target Start/End: Original strand, 15655029 - 15655135
Alignment:
Q  414 tacctcaaaccataataactcaacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtgcaataaa 513  Q
    |||||||||||||| |||||| || |||||||||||||| || |||||||||||||||||||||| | |||||||||||||| |||| ||||||||||||    
T  15655029 tacctcaaaccatactaactcgacgcacatttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattttgcagccaagtgcaataaa 15655128  T
Q  514 ttgtttc 520  Q
     ||||||    
T  15655129 gtgtttc 15655135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 414 - 511
Target Start/End: Original strand, 15645877 - 15645974
Alignment:
Q  414 tacctcaaaccataataactcaacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtgcaata 511  Q
    |||||||||||||| |||||| || |||||||||||||| || |||||||||||||||||||||  | |||||||||||||| |||| ||||||||||    
T  15645877 tacctcaaaccatagtaactcgacgcacatttgaaaagcagctccagaaaccaattcaagttgatttcgtggtgctaattttgcagccaagtgcaata 15645974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 520
Target Start/End: Original strand, 15605601 - 15605651
Alignment:
Q  470 caagttgaccttgtggtgctaattttccagctaagtgcaataaattgtttc 520  Q
    |||||||| ||||||||||||||||| |||| |||||||||||| ||||||    
T  15605601 caagttgaacttgtggtgctaattttgcagccaagtgcaataaagtgtttc 15605651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 15534437 - 15534495
Alignment:
Q  346 taaaaataaattagt--taaatttattaagtacagtaggataattgtgtatgcacacaa 402  Q
    ||||||||||||||   ||||||||||||||| |||||||||||| |||||||| ||||    
T  15534437 taaaaataaattagagataaatttattaagtaaagtaggataattctgtatgcaaacaa 15534495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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