View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10479_high_2 (Length: 429)
Name: NF10479_high_2
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10479_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 169 - 413
Target Start/End: Original strand, 4953391 - 4953635
Alignment:
| Q |
169 |
aatgatagagaaaagggtacatacctataatgttatcacttaatatggactttggtttcggcattgaatcagtaaacaaaggtccttgcaatgaagtcca |
268 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4953391 |
aatggtagagaaaagggtacatacctataatgttatcacttaatatggactttggtttcggcattgaatcagtaaacaaaggtccttgcaatgaagtcca |
4953490 |
T |
|
| Q |
269 |
aaaatctgagagtttaggcaccatgttactatcctataaaattttatgaggttgaatgtcacaatgaaaaatggtacattttgttcctgtgtgaagatag |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4953491 |
aaaatctgagagtttaggcaccatgttactatccaataaaattttatgaggttgaatgtcacaatgaaaaatggtacgttttgttcctgtgtgaagatag |
4953590 |
T |
|
| Q |
369 |
tgtactccacatgctgctccaatgcaaatttttagcctttgtttc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4953591 |
tgtactccacatgctgctccaatgcaaatttttagcctttgtttc |
4953635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 3266025 - 3265977
Alignment:
| Q |
26 |
ttgaaatctaaggaacacaaacatgccacatcattcttgaaaccaatca |
74 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||||||| |||||| |
|
|
| T |
3266025 |
ttgaaatctaagggacactaacatttcacatcattcttgaaatcaatca |
3265977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University