View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10479_high_3 (Length: 327)
Name: NF10479_high_3
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10479_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 31706503 - 31706812
Alignment:
| Q |
1 |
atttgatgaatggactaaccaactatatttcaatttctactaaaatatgaaagaacaaaaaattacctggccggttcgatgtatataaacagaaactatt |
100 |
Q |
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| T |
31706503 |
atttgatgaatggactaaccaactatatttcaatttctactaaaatatgaaagaacaaaaaattacctggccggttcgatgtatataaacagaaactatt |
31706602 |
T |
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| Q |
101 |
ttcgagtgaagatcacctacaaatatcaatcaccaaatatagtttaatcattttgcaattttgcaaatgaaaacaagtattagtgtctcaaaactcgatt |
200 |
Q |
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| T |
31706603 |
ttccagtgaagatcacctacatacatcaatcaccaaatatagtttaatcattttgcaattttgcaaatgaaaacaagtattagtgtctcaaaactcgatt |
31706702 |
T |
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| Q |
201 |
tattaaaattacctttgcgagttcgtttgagtaattcagttcctctagcaagaagttcttggctgcaagtacttagaaaattatctgcattgataacctc |
300 |
Q |
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| T |
31706703 |
tattaaaattacctttgcgagttcgtttgagtaattcagttcctctagcaagaagttcttggctgcaagtactcagaaaattatctgcattgataacctc |
31706802 |
T |
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| Q |
301 |
tcctccactt |
310 |
Q |
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| T |
31706803 |
tcctccactt |
31706812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 38269485 - 38269424
Alignment:
| Q |
57 |
aaaaaattacctggccggttcgatgtatataaacagaaactattttcgagtgaagatcacct |
118 |
Q |
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| T |
38269485 |
aaaaatttacatgtcccgttcgatgtatgtaaacagaaactattttccagtgtagatcacct |
38269424 |
T |
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