View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10479_high_5 (Length: 297)
Name: NF10479_high_5
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10479_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 8876718 - 8876985
Alignment:
| Q |
21 |
tagtgtagggaaccatttacattgcataggacaatttgtttgggtgaatcaagatgctatagaggtagtttgctgatatgcacagtttatgtgcttgctg |
120 |
Q |
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| T |
8876718 |
tagtgtagggaaccatttacaatgcataggacaatttgtttgggtgaatcaagatgctatagaggtagtttgctgatatgcacagtttatgtgcttgctg |
8876817 |
T |
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| Q |
121 |
acatgttaggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcaga-nnnnnnngactgcttttgccaatgcatt |
219 |
Q |
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| T |
8876818 |
acatgttaggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcagattttttttgactgcttttgccaatgcatt |
8876917 |
T |
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| Q |
220 |
tcatgctctacagctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctttg |
287 |
Q |
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| T |
8876918 |
tcatgctctacagctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctttg |
8876985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 9394244 - 9393978
Alignment:
| Q |
19 |
tatagtgtagggaaccatttacattgcataggacaatttgtttgggtgaatcaaga---tgctatagaggtagtttgctgatatgcacagtttatgtgct |
115 |
Q |
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| T |
9394244 |
tatagtgcagggaaccatttacaatgcatattacaatttgtttgggtgaatcaagaagatgctatagaggtagtttgctgatatgcacaatttatgtgct |
9394145 |
T |
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| Q |
116 |
tgctgacatgttaggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcagannnnnnngactgcttttgccaatg |
215 |
Q |
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| T |
9394144 |
tgctgatatgataggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgtagatttta---actgcttttgccaatg |
9394048 |
T |
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| Q |
216 |
catttcatgctctacagctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctt |
285 |
Q |
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| T |
9394047 |
catctcatgcactacagccactcaaagttcctgaatccaggttagactatgttgttattcttaatgcctt |
9393978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 336224 - 336119
Alignment:
| Q |
155 |
atatgtatgtgactaatacttatacatatatt--gcagannnnnnngactgcttttgccaatgcatttcatgctctacagctactcaaaattcctgaatc |
252 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| || |
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| T |
336224 |
atatgtatgtgactaatactcctacatatattttgcagatttt---gactgcttttgccaatgcatttcatgctctacagccactcaaagttcctggatt |
336128 |
T |
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| Q |
253 |
caggttaga |
261 |
Q |
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| T |
336127 |
caggttaga |
336119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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